Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SDC entry

There are 2 chains in PDB entry 8SDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 296
B
 MET 1SER 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8SDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 43Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
77 80Right-handed 310
Helix 4
AA4
A
81 96Right-handed alpha
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
134 141Right-handed alpha
Helix 7
AA7
A
143 150Right-handed alpha
Helix 8
AA8
A
151 156Right-handed alpha
Helix 9
AA9
A
161 169Right-handed alpha
Helix 10
AB1
A
170 183Right-handed alpha
Helix 11
AB2
A
186 190Right-handed 310
Helix 12
AB3
A
191 203Right-handed alpha
Helix 13
AB4
A
204 219Right-handed alpha
Helix 14
AB5
A
220 229Right-handed alpha
Helix 15
AB6
A
246 252Right-handed alpha
Helix 16
AB7
A
253 260Right-handed alpha
Helix 17
AB8
A
275 280Right-handed alpha
Helix 18
AB9
A
280 295Right-handed alpha
Helix 19
AC1
B
40 43Right-handed 310
Helix 20
AC2
B
44 52Right-handed alpha
Helix 21
AC3
B
77 80Right-handed 310
Helix 22
AC4
B
81 96Right-handed alpha
Helix 23
AC5
B
107 120Right-handed alpha
Helix 24
AC6
B
134 141Right-handed alpha
Helix 25
AC7
B
143 150Right-handed alpha
Helix 26
AC8
B
151 156Right-handed alpha
Helix 27
AC9
B
161 169Right-handed alpha
Helix 28
AD1
B
170 183Right-handed alpha
Helix 29
AD2
B
186 190Right-handed 310
Helix 30
AD3
B
191 203Right-handed alpha
Helix 31
AD4
B
204 220Right-handed alpha
Helix 32
AD5
B
220 229Right-handed alpha
Helix 33
AD6
B
246 252Right-handed alpha
Helix 34
AD7
B
253 260Right-handed alpha
Helix 35
AD8
B
275 280Right-handed alpha
Helix 36
AD9
B
280 295Right-handed alpha
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There are 2 sheets in PDB entry 8SDC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 12first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
56 60anti-parallel
Strand 4
A
30 34parallel
Strand 5
A
101 106parallel
Strand 6
A
124 130parallel
Strand 7
A
238 243parallel
Strand 8
A
265 270parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
17 23anti-parallel
Strand 3
B
56 60anti-parallel
Strand 4
B
30 34parallel
Strand 5
B
101 106parallel
Strand 6
B
124 130parallel
Strand 7
B
238 243parallel
Strand 8
B
265 270parallel
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