Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SDF entry

There are 6 chains in PDB entry 8SDF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Z	THR 333	PRO 527
H	GLN 1	LYS 213
L	GLN 1	THR 209
A	ASN 334	PRO 527
B	GLN 1	LYS 213
C	GLN 1	THR 209

There are 36 helices in PDB entry 8SDF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Z	337	343	Right-handed alpha
Helix 2	AA2	Z	349	353	Right-handed 310
Helix 3	AA3	Z	364	370	Right-handed alpha
Helix 4	AA4	Z	386	389	Right-handed 310
Helix 5	AA5	Z	405	410	Right-handed 310
Helix 6	AA6	Z	416	422	Right-handed alpha
Helix 7	AA7	Z	438	443	Right-handed alpha
Helix 8	AA8	Z	502	505	Right-handed 310
Helix 9	AA9	H	28	32	Right-handed 310
Helix 10	AB1	H	61	64	Right-handed 310
Helix 11	AB2	H	73	75	Right-handed 310
Helix 12	AB3	H	83	87	Right-handed 310
Helix 13	AB4	H	100	100	Right-handed 310
Helix 14	AB5	H	155	157	Right-handed 310
Helix 15	AB6	H	186	188	Right-handed 310
Helix 16	AB7	H	200	203	Right-handed 310
Helix 17	AB8	L	79	83	Right-handed 310
Helix 18	AB9	L	121	126	Right-handed alpha
Helix 19	AC1	L	181	187	Right-handed alpha
Helix 20	AC2	A	337	343	Right-handed alpha
Helix 21	AC3	A	349	353	Right-handed 310
Helix 22	AC4	A	365	370	Right-handed alpha
Helix 23	AC5	A	383	389	Right-handed 310
Helix 24	AC6	A	405	410	Right-handed 310
Helix 25	AC7	A	416	422	Right-handed alpha
Helix 26	AC8	A	438	443	Right-handed alpha
Helix 27	AC9	A	502	505	Right-handed 310
Helix 28	AD1	B	28	32	Right-handed 310
Helix 29	AD2	B	73	75	Right-handed 310
Helix 30	AD3	B	83	87	Right-handed 310
Helix 31	AD4	B	100	100	Right-handed 310
Helix 32	AD5	B	155	157	Right-handed 310
Helix 33	AD6	B	200	203	Right-handed 310
Helix 34	AD7	C	79	83	Right-handed 310
Helix 35	AD8	C	121	126	Right-handed alpha
Helix 36	AD9	C	181	187	Right-handed alpha

There are 32 sheets in PDB entry 8SDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	354	358	first strand
Strand 2	Z	394	403	anti-parallel
Strand 3	Z	507	516	anti-parallel
Strand 4	Z	431	437	anti-parallel
Strand 5	Z	376	380	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	361	362	first strand
Strand 2	Z	524	525	parallel
Strand 3	Z	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	452	454	first strand
Strand 2	Z	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	473	474	first strand
Strand 2	Z	488	489	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	123	first strand
Strand 2	H	134	144	anti-parallel
Strand 3	H	175	184	anti-parallel
Strand 4	H	162	164	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	131	first strand
Strand 2	H	134	144	anti-parallel
Strand 3	H	175	184	anti-parallel
Strand 4	H	168	169	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	153	first strand
Strand 2	H	194	199	anti-parallel
Strand 3	H	204	209	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	77	82	anti-parallel
Strand 4	B	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	34	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	107	111	parallel
Strand 3	B	88	95	anti-parallel
Strand 4	B	100	103	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	137	144	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	123	first strand
Strand 2	B	137	144	anti-parallel
Strand 3	B	175	181	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	193	199	anti-parallel
Strand 3	B	204	210	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	92	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	45	48	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	102	106	parallel
Strand 3	C	84	92	anti-parallel
Strand 4	C	95	98	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	24	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	62	67	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	159	161	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	130	139	anti-parallel
Strand 3	C	172	180	anti-parallel
Strand 4	C	165	166	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	154	first strand
Strand 2	C	145	150	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	200	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SDF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDF