Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SDP entry

There are 6 chains in PDB entry 8SDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 164GLN 371
B
 LEU 165ASP 369
C
 SER 164ARG 370
I
 PRO 4TYR 35
X
 PRO 4VAL 36
Y
 ASP 3TYR 35
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8SDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 170Right-handed alpha
Helix 2
AA2
A
170 180Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
269 273Right-handed 310
Helix 5
AA5
A
357 371Right-handed alpha
Helix 6
AA6
B
166 170Right-handed alpha
Helix 7
AA7
B
170 180Right-handed alpha
Helix 8
AA8
B
218 223Right-handed 310
Helix 9
AA9
B
269 273Right-handed 310
Helix 10
AB1
B
357 369Right-handed alpha
Helix 11
AB2
C
165 170Right-handed alpha
Helix 12
AB3
C
170 180Right-handed alpha
Helix 13
AB4
C
219 224Right-handed alpha
Helix 14
AB5
C
269 273Right-handed 310
Helix 15
AB6
C
357 370Right-handed alpha
Helix 16
AB7
I
12 17Right-handed alpha
Helix 17
AB8
X
12 17Right-handed alpha
Helix 18
AB9
Y
12 17Right-handed alpha
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There are 8 sheets in PDB entry 8SDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 191first strand
Strand 2
A
198 208anti-parallel
Strand 3
A
214 217anti-parallel
Strand 4
A
251 255anti-parallel
Strand 5
A
237 246anti-parallel
Strand 6
A
227 231anti-parallel
Strand 7
A
183 191anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 286first strand
Strand 2
A
289 299anti-parallel
Strand 3
A
318 319anti-parallel
Strand 4
A
351 356anti-parallel
Strand 5
A
339 348anti-parallel
Strand 6
A
331 334anti-parallel
Strand 7
A
278 286anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
227 231anti-parallel
Strand 3
B
183 190anti-parallel
Strand 4
B
199 208anti-parallel
Strand 5
B
214 217anti-parallel
Strand 6
B
251 255anti-parallel
Strand 7
B
241 246anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 296first strand
Strand 2
B
278 286anti-parallel
Strand 3
B
331 334anti-parallel
Strand 4
B
339 348anti-parallel
Strand 5
B
351 356anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 190first strand
Strand 2
C
199 208anti-parallel
Strand 3
C
214 217anti-parallel
Strand 4
C
251 255anti-parallel
Strand 5
C
237 246anti-parallel
Strand 6
C
227 231anti-parallel
Strand 7
C
183 190anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
278 286first strand
Strand 2
C
289 299anti-parallel
Strand 3
C
318 319anti-parallel
Strand 4
C
351 356anti-parallel
Strand 5
C
339 348anti-parallel
Strand 6
C
331 334anti-parallel
Strand 7
C
278 286anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
24 26first strand
Strand 2
I
31 33anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
24 26first strand
Strand 2
X
31 33anti-parallel
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