Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SDQ entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 8SDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 978LYS 1110
B
 GLY 2GLY 4
B
 GLY 6GLY 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8SDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
980 1002Right-handed alpha
Helix 2
AA2
A
1003 1010Right-handed 310
Helix 3
AA3
A
1020 1025Right-handed alpha
Helix 4
AA4
A
1030 1040Right-handed alpha
Helix 5
AA5
A
1045 1064Right-handed alpha
Helix 6
AA6
A
1068 1093Right-handed alpha
Helix 7
AA7
A
1094 1110Right-handed alpha
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There are no sheets in PDB entry 8SDQ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il