Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SDS entry

There is 1 chain in PDB entry 8SDS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLU 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8SDS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 23Right-handed alpha
Helix 2
AA2
A
65 80Right-handed alpha
Helix 3
AA3
A
88 97Right-handed 310
Helix 4
AA4
A
99 104Right-handed 310
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
128 139Right-handed alpha
Helix 7
AA7
A
152 167Right-handed alpha
Helix 8
AA8
A
170 178Right-handed alpha
Helix 9
AA9
A
178 184Right-handed alpha
Helix 10
AB1
A
193 200Right-handed 310
Helix 11
AB2
A
205 209Right-handed 310
Helix 12
AB3
A
218 224Right-handed alpha
Helix 13
AB4
A
229 241Right-handed alpha
Helix 14
AB5
A
242 245Right-handed 310
Helix 15
AB6
A
246 255Right-handed alpha
Helix 16
AB7
A
280 288Right-handed alpha
Helix 17
AB8
A
289 295Right-handed alpha
Helix 18
AB9
A
331 333Right-handed 310
Helix 19
AC1
A
346 362Right-handed alpha
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There are 3 sheets in PDB entry 8SDS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
37 47anti-parallel
Strand 3
A
27 34anti-parallel
Strand 4
A
335 341anti-parallel
Strand 5
A
323 330anti-parallel
Strand 6
A
312 320anti-parallel
Strand 7
A
273 276anti-parallel
Strand 8
A
266 268anti-parallel
Strand 9
A
258 263anti-parallel
Strand 10
A
300 307anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
226 228anti-parallel
Strand 3
A
188 189anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 149first strand
Strand 2
A
297 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il