Analysis of interatomic Contacts of Structural Units in PDB entry:
8SDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SDU entry

There is 1 chain in PDB entry 8SDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ARG 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8SDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
A
14 26Right-handed alpha
Helix 3
AA3
A
27 36Right-handed alpha
Helix 4
AA4
A
37 42Right-handed alpha
Helix 5
AA5
A
119 125Right-handed alpha
Helix 6
AA6
A
127 130Right-handed 310
Helix 7
AA7
A
131 160Right-handed alpha
Helix 8
AA8
A
160 181Right-handed alpha
Helix 9
AA9
A
184 213Right-handed alpha
Helix 10
AB1
A
214 217Right-handed 310
Helix 11
AB2
A
218 244Right-handed alpha
Helix 12
AB3
A
246 256Right-handed alpha
Helix 13
AB4
A
256 266Right-handed alpha
Helix 14
AB5
A
271 278Right-handed alpha
Helix 15
AB6
A
280 296Right-handed alpha
Helix 16
AB7
A
297 303Right-handed alpha
Helix 17
AB8
A
305 313Right-handed alpha
Helix 18
AB9
A
327 332Right-handed alpha
Helix 19
AC1
A
332 358Right-handed alpha
Helix 20
AC2
A
359 364Right-handed 310
Helix 21
AC3
A
366 392Right-handed alpha
Helix 22
AC4
A
393 415Right-handed alpha
Helix 23
AC5
A
419 449Right-handed alpha
Helix 24
AC6
A
453 477Right-handed alpha
Helix 25
AC7
A
478 481Right-handed 310
Helix 26
AC8
A
484 501Right-handed alpha
Helix 27
AC9
A
502 504Right-handed 310
Helix 28
AD1
A
515 524Right-handed alpha
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There are 2 sheets in PDB entry 8SDU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
109 111anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 81first strand
Strand 2
A
102 103anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il