Analysis of interatomic Contacts of Structural Units in PDB entry:
8SE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SE3 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 8SE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 30LYS 499
A
 PHE 501LEU 641
A
 PRO 643PHE 660
A
 TYR 662VAL 671
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8SE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 82Right-handed 310
Helix 2
AA2
A
140 147Right-handed 310
Helix 3
AA3
A
232 237Right-handed 310
Helix 4
AA4
A
263 269Right-handed alpha
Helix 5
AA5
A
281 285Right-handed 310
Helix 6
AA6
A
338 340Right-handed 310
Helix 7
AA7
A
375 381Right-handed alpha
Helix 8
AA8
A
383 395Right-handed alpha
Helix 9
AA9
A
427 435Right-handed alpha
Helix 10
AB1
A
439 460Right-handed alpha
Helix 11
AB2
A
468 470Right-handed 310
Helix 12
AB3
A
504 508Right-handed 310
Helix 13
AB4
A
509 514Right-handed alpha
Helix 14
AB5
A
520 537Right-handed alpha
Helix 15
AB6
A
545 555Right-handed alpha
Helix 16
AB7
A
565 576Right-handed alpha
Helix 17
AB8
A
579 583Right-handed 310
Helix 18
AB9
A
589 596Right-handed alpha
Helix 19
AC1
A
597 601Right-handed 310
Helix 20
AC2
A
604 610Right-handed alpha
Helix 21
AC3
A
631 636Right-handed alpha
Helix 22
AC4
A
645 650Right-handed alpha
Helix 23
AC5
A
651 652Right-handed 310
Helix 24
AC6
A
653 658Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 8SE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
64 67anti-parallel
Strand 3
A
73 75anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
129 132anti-parallel
Strand 3
A
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 230first strand
Strand 2
A
172 181anti-parallel
Strand 3
A
161 169anti-parallel
Strand 4
A
271 276anti-parallel
Strand 5
A
288 290anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
194 201anti-parallel
Strand 3
A
239 246anti-parallel
Strand 4
A
254 262anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 351first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
367 374anti-parallel
Strand 4
A
415 421anti-parallel
Strand 5
A
406 411anti-parallel
Strand 6
A
662 663anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
472 474first strand
Strand 2
A
480 482anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il