Analysis of interatomic Contacts of Structural Units in PDB entry:
8SE7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SE7 entry

There are 13 chains in PDB entry 8SE7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 162	ALA 372
B	PRO 162	HIS 368
C	ASP 161	HIS 368
I	PRO 4	GLY 35
X	HIS 1	ARG 37
Y	ASP 3	GLN 38
D	LEU 165	GLN 371
E	SER 164	SER 367
F	ASN 163	ARG 370
G	PRO 4	ARG 37
H	PRO 4	LEU 36
J	ASP 3	LEU 36
K	PRO 162	HIS 226

There are 64 helices in PDB entry 8SE7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	170	Right-handed alpha
Helix 2	AA2	A	170	180	Right-handed alpha
Helix 3	AA3	A	218	223	Right-handed 310
Helix 4	AA4	A	269	273	Right-handed 310
Helix 5	AA5	A	357	372	Right-handed alpha
Helix 6	AA6	B	170	180	Right-handed alpha
Helix 7	AA7	B	218	223	Right-handed 310
Helix 8	AA8	B	269	273	Right-handed 310
Helix 9	AA9	B	357	368	Right-handed alpha
Helix 10	AB1	C	164	168	Right-handed 310
Helix 11	AB2	C	170	180	Right-handed alpha
Helix 12	AB3	C	218	222	Right-handed 310
Helix 13	AB4	C	269	273	Right-handed 310
Helix 14	AB5	C	357	367	Right-handed alpha
Helix 15	AB6	I	12	17	Right-handed alpha
Helix 16	AB7	X	12	17	Right-handed alpha
Helix 17	AB8	Y	12	17	Right-handed alpha
Helix 18	AB9	D	170	180	Right-handed alpha
Helix 19	AC1	D	218	223	Right-handed 310
Helix 20	AC2	D	357	371	Right-handed alpha
Helix 21	AC3	E	165	170	Right-handed alpha
Helix 22	AC4	E	170	180	Right-handed alpha
Helix 23	AC5	E	220	222	Right-handed 310
Helix 24	AC6	E	269	273	Right-handed 310
Helix 25	AC7	E	357	367	Right-handed alpha
Helix 26	AC8	F	164	170	Right-handed alpha
Helix 27	AC9	F	170	180	Right-handed alpha
Helix 28	AD1	F	218	223	Right-handed 310
Helix 29	AD2	F	357	370	Right-handed alpha
Helix 30	AD3	G	12	17	Right-handed alpha
Helix 31	AD4	H	12	17	Right-handed alpha
Helix 32	AD5	J	12	17	Right-handed alpha
Helix 33	AD6	K	165	170	Right-handed alpha
Helix 34	AD7	K	170	180	Right-handed alpha
Helix 35	AD8	K	218	222	Right-handed 310
Helix 36	AD9	K	269	273	Right-handed 310
Helix 37	AE1	K	357	367	Right-handed alpha
Helix 38	AE2	L	164	168	Right-handed 310
Helix 39	AE3	L	170	180	Right-handed alpha
Helix 40	AE4	L	218	222	Right-handed 310
Helix 41	AE5	L	269	273	Right-handed 310
Helix 42	AE6	L	357	368	Right-handed alpha
Helix 43	AE7	M	164	169	Right-handed alpha
Helix 44	AE8	M	170	180	Right-handed alpha
Helix 45	AE9	M	269	273	Right-handed 310
Helix 46	AF1	M	357	368	Right-handed alpha
Helix 47	AF2	N	12	17	Right-handed 310
Helix 48	AF3	O	12	17	Right-handed alpha
Helix 49	AF4	P	12	17	Right-handed alpha
Helix 50	AF5	Q	170	180	Right-handed alpha
Helix 51	AF6	Q	218	223	Right-handed 310
Helix 52	AF7	Q	269	273	Right-handed 310
Helix 53	AF8	Q	357	369	Right-handed alpha
Helix 54	AF9	R	164	169	Right-handed alpha
Helix 55	AG1	R	170	180	Right-handed alpha
Helix 56	AG2	R	218	222	Right-handed 310
Helix 57	AG3	R	269	273	Right-handed 310
Helix 58	AG4	R	357	369	Right-handed alpha
Helix 59	AG5	S	164	168	Right-handed 310
Helix 60	AG6	S	170	180	Right-handed alpha
Helix 61	AG7	S	218	223	Right-handed 310
Helix 62	AG8	S	357	371	Right-handed alpha
Helix 63	AG9	U	12	17	Right-handed alpha
Helix 64	AH1	V	12	17	Right-handed alpha

There are 34 sheets in PDB entry 8SE7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	190	first strand
Strand 2	A	199	208	anti-parallel
Strand 3	A	214	217	anti-parallel
Strand 4	A	251	255	anti-parallel
Strand 5	A	237	246	anti-parallel
Strand 6	A	227	231	anti-parallel
Strand 7	A	183	190	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	296	first strand
Strand 2	A	278	286	anti-parallel
Strand 3	A	331	334	anti-parallel
Strand 4	A	339	344	anti-parallel
Strand 5	A	352	356	anti-parallel
Strand 6	A	317	319	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	190	first strand
Strand 2	B	199	208	anti-parallel
Strand 3	B	214	217	anti-parallel
Strand 4	B	251	255	anti-parallel
Strand 5	B	237	246	anti-parallel
Strand 6	B	227	231	anti-parallel
Strand 7	B	183	190	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	291	299	anti-parallel
Strand 3	B	317	319	anti-parallel
Strand 4	B	352	356	anti-parallel
Strand 5	B	339	344	anti-parallel
Strand 6	B	331	334	anti-parallel
Strand 7	B	278	283	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	190	first strand
Strand 2	C	199	208	anti-parallel
Strand 3	C	214	217	anti-parallel
Strand 4	C	251	256	anti-parallel
Strand 5	C	237	246	anti-parallel
Strand 6	C	227	231	anti-parallel
Strand 7	C	183	190	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	296	first strand
Strand 2	C	278	283	anti-parallel
Strand 3	C	331	334	anti-parallel
Strand 4	C	339	348	anti-parallel
Strand 5	C	351	356	anti-parallel
Strand 6	C	317	319	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	26	first strand
Strand 2	I	31	32	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	24	26	first strand
Strand 2	X	31	33	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	22	24	first strand
Strand 2	Y	33	34	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	239	first strand
Strand 2	D	227	231	anti-parallel
Strand 3	D	183	191	anti-parallel
Strand 4	D	198	208	anti-parallel
Strand 5	D	214	217	anti-parallel
Strand 6	D	251	255	anti-parallel
Strand 7	D	241	246	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	278	283	first strand
Strand 2	D	291	299	anti-parallel
Strand 3	D	317	319	anti-parallel
Strand 4	D	352	356	anti-parallel
Strand 5	D	339	344	anti-parallel
Strand 6	D	331	334	anti-parallel
Strand 7	D	278	283	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	189	first strand
Strand 2	E	202	208	anti-parallel
Strand 3	E	214	218	anti-parallel
Strand 4	E	251	255	anti-parallel
Strand 5	E	237	246	anti-parallel
Strand 6	E	227	231	anti-parallel
Strand 7	E	183	189	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	278	283	first strand
Strand 2	E	291	299	anti-parallel
Strand 3	E	317	319	anti-parallel
Strand 4	E	352	356	anti-parallel
Strand 5	E	339	343	anti-parallel
Strand 6	E	331	334	anti-parallel
Strand 7	E	278	283	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	191	first strand
Strand 2	F	198	208	anti-parallel
Strand 3	F	214	217	anti-parallel
Strand 4	F	251	255	anti-parallel
Strand 5	F	237	246	anti-parallel
Strand 6	F	227	231	anti-parallel
Strand 7	F	183	191	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	278	286	first strand
Strand 2	F	289	300	anti-parallel
Strand 3	F	317	319	anti-parallel
Strand 4	F	352	356	anti-parallel
Strand 5	F	339	342	anti-parallel
Strand 6	F	331	334	anti-parallel
Strand 7	F	278	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	26	first strand
Strand 2	G	31	33	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	26	first strand
Strand 2	H	31	33	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	191	first strand
Strand 2	K	198	208	anti-parallel
Strand 3	K	214	217	anti-parallel
Strand 4	K	251	255	anti-parallel
Strand 5	K	237	246	anti-parallel
Strand 6	K	227	231	anti-parallel
Strand 7	K	183	191	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	286	first strand
Strand 2	K	289	299	anti-parallel
Strand 3	K	317	319	anti-parallel
Strand 4	K	352	356	anti-parallel
Strand 5	K	339	344	anti-parallel
Strand 6	K	331	334	anti-parallel
Strand 7	K	278	286	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	183	190	first strand
Strand 2	L	199	208	anti-parallel
Strand 3	L	214	217	anti-parallel
Strand 4	L	251	255	anti-parallel
Strand 5	L	237	246	anti-parallel
Strand 6	L	227	231	anti-parallel
Strand 7	L	183	190	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	289	296	first strand
Strand 2	L	278	286	anti-parallel
Strand 3	L	331	334	anti-parallel
Strand 4	L	339	344	anti-parallel
Strand 5	L	352	356	anti-parallel
Strand 6	L	317	319	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	183	188	first strand
Strand 2	M	202	208	anti-parallel
Strand 3	M	214	218	anti-parallel
Strand 4	M	251	256	anti-parallel
Strand 5	M	237	246	anti-parallel
Strand 6	M	229	231	anti-parallel
Strand 7	M	183	188	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	289	296	first strand
Strand 2	M	278	286	anti-parallel
Strand 3	M	331	334	anti-parallel
Strand 4	M	339	348	anti-parallel
Strand 5	M	351	356	anti-parallel
Strand 6	M	317	319	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	24	26	first strand
Strand 2	N	31	33	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	24	26	first strand
Strand 2	O	31	33	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	183	190	first strand
Strand 2	Q	199	208	anti-parallel
Strand 3	Q	214	217	anti-parallel
Strand 4	Q	251	255	anti-parallel
Strand 5	Q	237	246	anti-parallel
Strand 6	Q	227	232	anti-parallel
Strand 7	Q	183	190	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	278	286	first strand
Strand 2	Q	289	299	anti-parallel
Strand 3	Q	317	319	anti-parallel
Strand 4	Q	352	356	anti-parallel
Strand 5	Q	339	344	anti-parallel
Strand 6	Q	331	334	anti-parallel
Strand 7	Q	278	286	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	183	191	first strand
Strand 2	R	198	208	anti-parallel
Strand 3	R	214	217	anti-parallel
Strand 4	R	251	255	anti-parallel
Strand 5	R	237	246	anti-parallel
Strand 6	R	227	231	anti-parallel
Strand 7	R	183	191	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	289	296	first strand
Strand 2	R	278	286	anti-parallel
Strand 3	R	331	334	anti-parallel
Strand 4	R	339	344	anti-parallel
Strand 5	R	352	356	anti-parallel
Strand 6	R	317	319	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	183	190	first strand
Strand 2	S	199	208	anti-parallel
Strand 3	S	214	217	anti-parallel
Strand 4	S	251	255	anti-parallel
Strand 5	S	237	246	anti-parallel
Strand 6	S	227	231	anti-parallel
Strand 7	S	183	190	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	278	283	first strand
Strand 2	S	291	299	anti-parallel
Strand 3	S	317	319	anti-parallel
Strand 4	S	352	356	anti-parallel
Strand 5	S	339	343	anti-parallel
Strand 6	S	331	334	anti-parallel
Strand 7	S	278	283	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	24	26	first strand
Strand 2	T	31	33	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	24	26	first strand
Strand 2	U	31	33	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	22	24	first strand
Strand 2	V	33	34	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SE7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SE7