Analysis of interatomic Contacts of Structural Units in PDB entry:
8SE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SE9 entry

There are 4 chains in PDB entry 8SE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24LEU 1012
B
 CYS 78GLY 157
C
 MET 2SER 153
D
 LEU 82GLY 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 8SE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 31Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
86 99Right-handed alpha
Helix 6
AA6
A
112 119Right-handed alpha
Helix 7
AA7
A
128 142Right-handed alpha
Helix 8
AA8
A
197 203Right-handed alpha
Helix 9
AA9
A
266 271Right-handed alpha
Helix 10
AB1
A
280 305Right-handed alpha
Helix 11
AB2
A
312 326Right-handed alpha
Helix 12
AB3
A
327 331Right-handed 310
Helix 13
AB4
A
342 352Right-handed alpha
Helix 14
AB5
A
357 378Right-handed alpha
Helix 15
AB6
A
391 395Right-handed 310
Helix 16
AB7
A
415 420Right-handed alpha
Helix 17
AB8
A
423 432Right-handed alpha
Helix 18
AB9
A
441 455Right-handed alpha
Helix 19
AC1
A
476 480Right-handed 310
Helix 20
AC2
A
484 488Right-handed 310
Helix 21
AC3
A
491 504Right-handed alpha
Helix 22
AC4
A
517 521Right-handed 310
Helix 23
AC5
A
525 530Right-handed alpha
Helix 24
AC6
A
541 556Right-handed alpha
Helix 25
AC7
A
585 593Right-handed alpha
Helix 26
AC8
A
597 601Right-handed 310
Helix 27
AC9
A
607 624Right-handed alpha
Helix 28
AD1
A
624 631Right-handed alpha
Helix 29
AD2
A
631 637Right-handed alpha
Helix 30
AD3
A
644 653Right-handed alpha
Helix 31
AD4
A
670 682Right-handed alpha
Helix 32
AD5
A
682 692Right-handed alpha
Helix 33
AD6
A
722 740Right-handed alpha
Helix 34
AD7
A
750 756Right-handed alpha
Helix 35
AD8
A
760 763Right-handed 310
Helix 36
AD9
A
764 770Right-handed alpha
Helix 37
AE1
A
782 798Right-handed alpha
Helix 38
AE2
A
816 832Right-handed alpha
Helix 39
AE3
A
838 844Right-handed alpha
Helix 40
AE4
A
853 874Right-handed alpha
Helix 41
AE5
A
877 881Right-handed 310
Helix 42
AE6
A
889 891Right-handed 310
Helix 43
AE7
A
927 939Right-handed alpha
Helix 44
AE8
A
959 967Right-handed alpha
Helix 45
AE9
A
970 980Right-handed alpha
Helix 46
AF1
B
103 116Right-handed alpha
Helix 47
AF2
B
136 141Right-handed 310
Helix 48
AF3
C
3 17Right-handed alpha
Helix 49
AF4
C
45 49Right-handed 310
Helix 50
AF5
C
100 114Right-handed alpha
Helix 51
AF6
C
122 132Right-handed alpha
Helix 52
AF7
C
132 148Right-handed alpha
Helix 53
AF8
D
103 116Right-handed alpha
Helix 54
AF9
D
136 141Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 8SE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 62first strand
Strand 2
A
35 38parallel
Strand 3
A
121 124parallel
Strand 4
A
145 147parallel
Strand 5
A
160 161anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
155 157anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
260 262anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
208 210anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
178 183anti-parallel
Strand 5
A
191 194anti-parallel
Strand 6
A
236 237anti-parallel
Strand 7
A
229 230anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 512first strand
Strand 2
A
464 467parallel
Strand 3
A
437 438parallel
Strand 4
A
535 537parallel
Strand 5
A
559 565parallel
Strand 6
A
568 574anti-parallel
Strand 7
A
883 887anti-parallel
Strand 8
A
892 896anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 906first strand
Strand 2
A
909 911anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 920first strand
Strand 2
A
1008 1011parallel
Strand 3
A
989 996anti-parallel
Strand 4
A
943 948anti-parallel
Strand 5
A
951 955anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
85 87anti-parallel
Strand 3
B
147 152parallel
Strand 4
B
122 126anti-parallel
Strand 5
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
51 56anti-parallel
Strand 4
C
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
85 86first strand
Strand 2
D
147 152parallel
Strand 3
D
122 125anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il