Analysis of interatomic Contacts of Structural Units in PDB entry:
8SEA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SEA entry

There are 4 chains in PDB entry 8SEA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 21LEU 1012
B
 ASP 79GLY 157
C
 MET 2SER 153
D
 LEU 82GLY 157
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 53 helices in PDB entry 8SEA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 32Right-handed alpha
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
69 74Right-handed 310
Helix 4
AA4
A
86 99Right-handed alpha
Helix 5
AA5
A
112 119Right-handed alpha
Helix 6
AA6
A
128 142Right-handed alpha
Helix 7
AA7
A
197 203Right-handed alpha
Helix 8
AA8
A
218 221Right-handed 310
Helix 9
AA9
A
266 273Right-handed alpha
Helix 10
AB1
A
280 305Right-handed alpha
Helix 11
AB2
A
312 326Right-handed alpha
Helix 12
AB3
A
327 331Right-handed 310
Helix 13
AB4
A
342 352Right-handed alpha
Helix 14
AB5
A
357 378Right-handed alpha
Helix 15
AB6
A
392 395Right-handed 310
Helix 16
AB7
A
404 409Right-handed alpha
Helix 17
AB8
A
415 423Right-handed alpha
Helix 18
AB9
A
423 433Right-handed alpha
Helix 19
AC1
A
442 455Right-handed alpha
Helix 20
AC2
A
473 478Right-handed alpha
Helix 21
AC3
A
484 488Right-handed 310
Helix 22
AC4
A
491 504Right-handed alpha
Helix 23
AC5
A
517 521Right-handed 310
Helix 24
AC6
A
525 532Right-handed alpha
Helix 25
AC7
A
541 556Right-handed alpha
Helix 26
AC8
A
585 593Right-handed alpha
Helix 27
AC9
A
598 603Right-handed alpha
Helix 28
AD1
A
607 631Right-handed alpha
Helix 29
AD2
A
631 637Right-handed alpha
Helix 30
AD3
A
644 651Right-handed alpha
Helix 31
AD4
A
653 657Right-handed 310
Helix 32
AD5
A
672 681Right-handed alpha
Helix 33
AD6
A
681 692Right-handed alpha
Helix 34
AD7
A
721 740Right-handed alpha
Helix 35
AD8
A
749 757Right-handed alpha
Helix 36
AD9
A
761 765Right-handed 310
Helix 37
AE1
A
782 800Right-handed alpha
Helix 38
AE2
A
817 832Right-handed alpha
Helix 39
AE3
A
838 845Right-handed alpha
Helix 40
AE4
A
853 873Right-handed alpha
Helix 41
AE5
A
877 881Right-handed 310
Helix 42
AE6
A
927 940Right-handed alpha
Helix 43
AE7
A
959 967Right-handed alpha
Helix 44
AE8
A
970 980Right-handed alpha
Helix 45
AE9
B
103 116Right-handed alpha
Helix 46
AF1
C
3 17Right-handed alpha
Helix 47
AF2
C
45 47Right-handed 310
Helix 48
AF3
C
100 114Right-handed alpha
Helix 49
AF4
C
122 132Right-handed alpha
Helix 50
AF5
C
132 148Right-handed alpha
Helix 51
AF6
D
103 116Right-handed alpha
Helix 52
AF7
D
118 122Right-handed 310
Helix 53
AF8
D
136 141Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 8SEA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
58 62parallel
Strand 3
A
34 38parallel
Strand 4
A
121 124parallel
Strand 5
A
145 147parallel
Strand 6
A
155 161anti-parallel
Strand 7
A
150 152anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
58 62parallel
Strand 3
A
34 38parallel
Strand 4
A
121 124parallel
Strand 5
A
145 147parallel
Strand 6
A
155 161anti-parallel
Strand 7
A
386 390anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
260 262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
253 256anti-parallel
Strand 3
A
208 210anti-parallel
Strand 4
A
226 227anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
191 194anti-parallel
Strand 3
A
236 237anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 216first strand
Strand 2
A
247 250anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
466 467parallel
Strand 3
A
437 438parallel
Strand 4
A
535 537parallel
Strand 5
A
559 563parallel
Strand 6
A
568 574anti-parallel
Strand 7
A
883 887anti-parallel
Strand 8
A
892 896anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
904 906first strand
Strand 2
A
909 911anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
917 919first strand
Strand 2
A
1008 1011parallel
Strand 3
A
989 994anti-parallel
Strand 4
A
945 948anti-parallel
Strand 5
A
951 955anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 98first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
147 152parallel
Strand 4
B
122 126anti-parallel
Strand 5
B
129 130anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
49 56anti-parallel
Strand 4
C
67 70anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 26first strand
Strand 2
C
34 39anti-parallel
Strand 3
C
49 56anti-parallel
Strand 4
C
149 150anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 126first strand
Strand 2
D
148 150anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il