Analysis of interatomic Contacts of Structural Units in PDB entry:
8SEI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SEI entry

There are 10 chains in PDB entry 8SEI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 306	PHE 378
B	VAL 306	PHE 378
C	VAL 306	PHE 378
D	VAL 306	PHE 378
E	VAL 306	PHE 378
F	VAL 306	PHE 378
G	VAL 306	PHE 378
H	VAL 306	PHE 378
I	VAL 306	PHE 378
J	VAL 306	PHE 378

There are no helices in PDB entry 8SEI

There are 15 sheets in PDB entry 8SEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	310	first strand
Strand 2	C	307	310	parallel
Strand 3	E	307	310	parallel
Strand 4	G	307	310	parallel
Strand 5	I	307	310	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	C	313	314	parallel
Strand 3	E	313	314	parallel
Strand 4	G	313	314	parallel
Strand 5	I	313	314	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	C	317	322	parallel
Strand 3	E	317	322	parallel
Strand 4	G	317	322	parallel
Strand 5	I	317	322	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	C	328	330	parallel
Strand 3	E	328	330	parallel
Strand 4	G	328	330	parallel
Strand 5	I	328	330	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	339	first strand
Strand 2	C	336	339	parallel
Strand 3	E	336	339	parallel
Strand 4	G	336	339	parallel
Strand 5	I	336	339	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	C	346	347	parallel
Strand 3	E	346	347	parallel
Strand 4	G	346	347	parallel
Strand 5	I	346	347	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	362	first strand
Strand 2	C	350	362	parallel
Strand 3	E	350	362	parallel
Strand 4	G	350	362	parallel
Strand 5	I	350	362	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	373	first strand
Strand 2	C	369	373	parallel
Strand 3	E	369	373	parallel
Strand 4	G	369	373	parallel
Strand 5	I	369	373	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	D	313	314	parallel
Strand 3	F	313	314	parallel
Strand 4	H	313	314	parallel
Strand 5	J	313	314	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	324	first strand
Strand 2	D	317	324	parallel
Strand 3	F	317	324	parallel
Strand 4	H	317	324	parallel
Strand 5	J	317	324	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	330	first strand
Strand 2	D	327	330	parallel
Strand 3	F	327	330	parallel
Strand 4	H	327	330	parallel
Strand 5	J	327	330	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	340	first strand
Strand 2	D	336	340	parallel
Strand 3	F	336	340	parallel
Strand 4	H	336	340	parallel
Strand 5	J	336	340	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	347	first strand
Strand 2	D	343	347	parallel
Strand 3	F	343	347	parallel
Strand 4	H	343	347	parallel
Strand 5	J	343	347	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	362	first strand
Strand 2	D	351	362	parallel
Strand 3	F	351	362	parallel
Strand 4	H	351	362	parallel
Strand 5	J	351	362	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	376	first strand
Strand 2	D	369	376	parallel
Strand 3	F	369	376	parallel
Strand 4	H	369	376	parallel
Strand 5	J	369	376	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SEI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SEI