Analysis of interatomic Contacts of Structural Units in PDB entry:
8SEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SEK entry

There are 10 chains in PDB entry 8SEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 9VAL 40
B
 GLY 9VAL 40
C
 GLY 9VAL 40
D
 GLY 9VAL 40
E
 GLY 9VAL 40
F
 GLY 9VAL 40
G
 GLY 9VAL 40
H
 GLY 9VAL 40
I
 GLY 9VAL 40
J
 GLY 9VAL 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8SEK

There are 8 sheets in PDB entry 8SEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
C
10 12parallel
Strand 3
E
10 12parallel
Strand 4
G
10 12parallel
Strand 5
I
10 12parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
C
15 17parallel
Strand 3
E
15 17parallel
Strand 4
G
15 17parallel
Strand 5
I
15 17parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
C
20 21parallel
Strand 3
E
20 21parallel
Strand 4
G
20 21parallel
Strand 5
I
20 21parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
C
30 36parallel
Strand 3
E
30 36parallel
Strand 4
G
30 36parallel
Strand 5
I
30 36parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
D
10 12parallel
Strand 3
F
10 12parallel
Strand 4
H
10 12parallel
Strand 5
J
10 12parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
D
15 17parallel
Strand 3
F
15 17parallel
Strand 4
H
15 17parallel
Strand 5
J
15 17parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
D
20 21parallel
Strand 3
F
20 21parallel
Strand 4
H
20 21parallel
Strand 5
J
20 21parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
D
30 36parallel
Strand 3
F
30 36parallel
Strand 4
H
30 36parallel
Strand 5
J
30 36parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il