Analysis of interatomic Contacts of Structural Units in PDB entry:
8SEY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SEY entry

There are 4 chains in PDB entry 8SEY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3950	SER 5037
B	ASN 3950	SER 5037
C	ASN 3950	SER 5037
D	ASN 3950	SER 5037

There are136 helices in PDB entry 8SEY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3950	3970	Right-handed alpha
Helix 2	AA2	A	3973	3983	Right-handed alpha
Helix 3	AA3	A	3984	4006	Right-handed alpha
Helix 4	AA4	A	4009	4031	Right-handed alpha
Helix 5	AA5	A	4038	4051	Right-handed alpha
Helix 6	AA6	A	4051	4056	Right-handed alpha
Helix 7	AA7	A	4198	4207	Right-handed alpha
Helix 8	AA8	A	4207	4224	Right-handed alpha
Helix 9	AA9	A	4229	4252	Right-handed alpha
Helix 10	AB1	A	4544	4558	Right-handed alpha
Helix 11	AB2	A	4558	4578	Right-handed alpha
Helix 12	AB3	A	4638	4665	Right-handed alpha
Helix 13	AB4	A	4665	4683	Right-handed alpha
Helix 14	AB5	A	4696	4703	Right-handed alpha
Helix 15	AB6	A	4704	4708	Right-handed 310
Helix 16	AB7	A	4719	4733	Right-handed alpha
Helix 17	AB8	A	4733	4742	Right-handed alpha
Helix 18	AB9	A	4744	4749	Right-handed 310
Helix 19	AC1	A	4773	4786	Right-handed alpha
Helix 20	AC2	A	4786	4805	Right-handed alpha
Helix 21	AC3	A	4806	4813	Right-handed 310
Helix 22	AC4	A	4814	4820	Right-handed alpha
Helix 23	AC5	A	4820	4833	Right-handed alpha
Helix 24	AC6	A	4833	4859	Right-handed alpha
Helix 25	AC7	A	4860	4863	Right-handed 310
Helix 26	AC8	A	4878	4893	Right-handed alpha
Helix 27	AC9	A	4896	4900	Right-handed 310
Helix 28	AD1	A	4909	4924	Right-handed alpha
Helix 29	AD2	A	4926	4957	Right-handed alpha
Helix 30	AD3	A	4964	4969	Right-handed alpha
Helix 31	AD4	A	4973	4981	Right-handed alpha
Helix 32	AD5	A	4984	4998	Right-handed alpha
Helix 33	AD6	A	5004	5016	Right-handed alpha
Helix 34	AD7	A	5027	5037	Right-handed alpha
Helix 35	AD8	B	3951	3970	Right-handed alpha
Helix 36	AD9	B	3973	3983	Right-handed alpha
Helix 37	AE1	B	3984	4006	Right-handed alpha
Helix 38	AE2	B	4009	4031	Right-handed alpha
Helix 39	AE3	B	4038	4051	Right-handed alpha
Helix 40	AE4	B	4051	4056	Right-handed alpha
Helix 41	AE5	B	4198	4207	Right-handed alpha
Helix 42	AE6	B	4207	4224	Right-handed alpha
Helix 43	AE7	B	4229	4252	Right-handed alpha
Helix 44	AE8	B	4544	4558	Right-handed alpha
Helix 45	AE9	B	4558	4578	Right-handed alpha
Helix 46	AF1	B	4638	4665	Right-handed alpha
Helix 47	AF2	B	4665	4683	Right-handed alpha
Helix 48	AF3	B	4696	4703	Right-handed alpha
Helix 49	AF4	B	4704	4708	Right-handed 310
Helix 50	AF5	B	4719	4733	Right-handed alpha
Helix 51	AF6	B	4733	4742	Right-handed alpha
Helix 52	AF7	B	4744	4749	Right-handed 310
Helix 53	AF8	B	4773	4786	Right-handed alpha
Helix 54	AF9	B	4786	4805	Right-handed alpha
Helix 55	AG1	B	4806	4813	Right-handed 310
Helix 56	AG2	B	4814	4820	Right-handed alpha
Helix 57	AG3	B	4820	4833	Right-handed alpha
Helix 58	AG4	B	4833	4859	Right-handed alpha
Helix 59	AG5	B	4860	4863	Right-handed 310
Helix 60	AG6	B	4878	4893	Right-handed alpha
Helix 61	AG7	B	4896	4900	Right-handed 310
Helix 62	AG8	B	4909	4924	Right-handed alpha
Helix 63	AG9	B	4926	4957	Right-handed alpha
Helix 64	AH1	B	4964	4969	Right-handed alpha
Helix 65	AH2	B	4973	4981	Right-handed alpha
Helix 66	AH3	B	4984	4998	Right-handed alpha
Helix 67	AH4	B	5004	5016	Right-handed alpha
Helix 68	AH5	B	5027	5037	Right-handed alpha
Helix 69	AH6	C	3951	3970	Right-handed alpha
Helix 70	AH7	C	3973	3983	Right-handed alpha
Helix 71	AH8	C	3984	4006	Right-handed alpha
Helix 72	AH9	C	4009	4031	Right-handed alpha
Helix 73	AI1	C	4038	4051	Right-handed alpha
Helix 74	AI2	C	4051	4056	Right-handed alpha
Helix 75	AI3	C	4198	4207	Right-handed alpha
Helix 76	AI4	C	4207	4224	Right-handed alpha
Helix 77	AI5	C	4229	4252	Right-handed alpha
Helix 78	AI6	C	4544	4558	Right-handed alpha
Helix 79	AI7	C	4558	4578	Right-handed alpha
Helix 80	AI8	C	4638	4665	Right-handed alpha
Helix 81	AI9	C	4665	4683	Right-handed alpha
Helix 82	AJ1	C	4696	4703	Right-handed alpha
Helix 83	AJ2	C	4704	4708	Right-handed 310
Helix 84	AJ3	C	4719	4733	Right-handed alpha
Helix 85	AJ4	C	4733	4742	Right-handed alpha
Helix 86	AJ5	C	4744	4749	Right-handed 310
Helix 87	AJ6	C	4773	4786	Right-handed alpha
Helix 88	AJ7	C	4786	4805	Right-handed alpha
Helix 89	AJ8	C	4806	4813	Right-handed 310
Helix 90	AJ9	C	4814	4820	Right-handed alpha
Helix 91	AK1	C	4820	4833	Right-handed alpha
Helix 92	AK2	C	4833	4859	Right-handed alpha
Helix 93	AK3	C	4860	4863	Right-handed 310
Helix 94	AK4	C	4878	4893	Right-handed alpha
Helix 95	AK5	C	4896	4900	Right-handed 310
Helix 96	AK6	C	4909	4924	Right-handed alpha
Helix 97	AK7	C	4926	4957	Right-handed alpha
Helix 98	AK8	C	4964	4969	Right-handed alpha
Helix 99	AK9	C	4973	4981	Right-handed alpha
Helix 100	AL1	C	4984	4998	Right-handed alpha
Helix 101	AL2	C	5004	5016	Right-handed alpha
Helix 102	AL3	C	5027	5037	Right-handed alpha
Helix 103	AL4	D	3951	3970	Right-handed alpha
Helix 104	AL5	D	3973	3983	Right-handed alpha
Helix 105	AL6	D	3984	4006	Right-handed alpha
Helix 106	AL7	D	4009	4031	Right-handed alpha
Helix 107	AL8	D	4038	4051	Right-handed alpha
Helix 108	AL9	D	4051	4056	Right-handed alpha
Helix 109	AM1	D	4198	4207	Right-handed alpha
Helix 110	AM2	D	4207	4224	Right-handed alpha
Helix 111	AM3	D	4229	4252	Right-handed alpha
Helix 112	AM4	D	4544	4558	Right-handed alpha
Helix 113	AM5	D	4558	4578	Right-handed alpha
Helix 114	AM6	D	4638	4665	Right-handed alpha
Helix 115	AM7	D	4665	4683	Right-handed alpha
Helix 116	AM8	D	4696	4703	Right-handed alpha
Helix 117	AM9	D	4704	4708	Right-handed 310
Helix 118	AN1	D	4719	4733	Right-handed alpha
Helix 119	AN2	D	4733	4742	Right-handed alpha
Helix 120	AN3	D	4744	4749	Right-handed 310
Helix 121	AN4	D	4773	4786	Right-handed alpha
Helix 122	AN5	D	4786	4805	Right-handed alpha
Helix 123	AN6	D	4806	4813	Right-handed 310
Helix 124	AN7	D	4814	4820	Right-handed alpha
Helix 125	AN8	D	4820	4833	Right-handed alpha
Helix 126	AN9	D	4833	4859	Right-handed alpha
Helix 127	AO1	D	4860	4863	Right-handed 310
Helix 128	AO2	D	4878	4893	Right-handed alpha
Helix 129	AO3	D	4896	4900	Right-handed 310
Helix 130	AO4	D	4909	4924	Right-handed alpha
Helix 131	AO5	D	4926	4957	Right-handed alpha
Helix 132	AO6	D	4964	4969	Right-handed alpha
Helix 133	AO7	D	4973	4981	Right-handed alpha
Helix 134	AO8	D	4984	4998	Right-handed alpha
Helix 135	AO9	D	5004	5016	Right-handed alpha
Helix 136	AP1	D	5027	5037	Right-handed alpha

There are 8 sheets in PDB entry 8SEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4181	4184	first strand
Strand 2	A	4190	4193	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4580	4583	first strand
Strand 2	A	4629	4632	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4181	4184	first strand
Strand 2	B	4190	4193	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4580	4583	first strand
Strand 2	B	4629	4632	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4181	4184	first strand
Strand 2	C	4190	4193	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4580	4583	first strand
Strand 2	C	4629	4632	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4181	4184	first strand
Strand 2	D	4190	4193	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4580	4583	first strand
Strand 2	D	4629	4632	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SEY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SEY