Analysis of interatomic Contacts of Structural Units in PDB entry:
8SF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SF5 entry

There are 4 chains in PDB entry 8SF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5THR 208
A
 PHE 210ASN 423
B
 LYS 5THR 208
B
 PHE 210GLU 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 8SF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 15Right-handed alpha
Helix 2
AA2
A
45 49Right-handed alpha
Helix 3
AA3
A
62 77Right-handed alpha
Helix 4
AA4
A
86 97Right-handed alpha
Helix 5
AA5
A
112 121Right-handed alpha
Helix 6
AA6
A
121 126Right-handed alpha
Helix 7
AA7
A
137 145Right-handed alpha
Helix 8
AA8
A
166 177Right-handed alpha
Helix 9
AA9
A
188 193Right-handed alpha
Helix 10
AB1
A
194 199Right-handed 310
Helix 11
AB2
A
234 239Right-handed alpha
Helix 12
AB3
A
241 245Right-handed 310
Helix 13
AB4
A
248 253Right-handed alpha
Helix 14
AB5
A
256 271Right-handed alpha
Helix 15
AB6
A
275 287Right-handed alpha
Helix 16
AB7
A
288 308Right-handed alpha
Helix 17
AB8
A
326 334Right-handed alpha
Helix 18
AB9
A
348 360Right-handed alpha
Helix 19
AC1
A
378 382Right-handed 310
Helix 20
AC2
A
388 395Right-handed alpha
Helix 21
AC3
A
410 423Right-handed alpha
Helix 22
AC4
B
7 15Right-handed alpha
Helix 23
AC5
B
62 77Right-handed alpha
Helix 24
AC6
B
86 97Right-handed alpha
Helix 25
AC7
B
112 121Right-handed alpha
Helix 26
AC8
B
121 126Right-handed alpha
Helix 27
AC9
B
137 145Right-handed alpha
Helix 28
AD1
B
166 177Right-handed alpha
Helix 29
AD2
B
188 193Right-handed alpha
Helix 30
AD3
B
194 199Right-handed 310
Helix 31
AD4
B
234 239Right-handed alpha
Helix 32
AD5
B
248 254Right-handed alpha
Helix 33
AD6
B
256 270Right-handed alpha
Helix 34
AD7
B
275 287Right-handed alpha
Helix 35
AD8
B
288 310Right-handed alpha
Helix 36
AD9
B
326 334Right-handed alpha
Helix 37
AE1
B
348 358Right-handed alpha
Helix 38
AE2
B
378 382Right-handed 310
Helix 39
AE3
B
388 395Right-handed alpha
Helix 40
AE4
B
410 423Right-handed alpha
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There are 4 sheets in PDB entry 8SF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 84first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
181 184parallel
Strand 5
A
149 155parallel
Strand 6
A
104 108parallel
Strand 7
A
129 133parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 317first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
402 405anti-parallel
Strand 4
A
375 377anti-parallel
Strand 5
A
364 365parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 84first strand
Strand 2
B
220 224anti-parallel
Strand 3
B
202 206anti-parallel
Strand 4
B
181 184parallel
Strand 5
B
149 155parallel
Strand 6
B
104 108parallel
Strand 7
B
129 133parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 317first strand
Strand 2
B
341 346anti-parallel
Strand 3
B
402 405anti-parallel
Strand 4
B
375 377anti-parallel
Strand 5
B
364 365parallel
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