Analysis of interatomic Contacts of Structural Units in PDB entry:
8SF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SF8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8SF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 13PHE 139
A
 GLU 141TRP 197
A
 LEU 199VAL 338
A
 ILE 340PHE 351
B
 THR 5ASP 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8SF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 33Right-handed alpha
Helix 2
AA2
A
40 42Right-handed 310
Helix 3
AA3
A
77 83Right-handed alpha
Helix 4
AA4
A
85 99Right-handed alpha
Helix 5
AA5
A
128 137Right-handed alpha
Helix 6
AA6
A
140 161Right-handed alpha
Helix 7
AA7
A
169 171Right-handed 310
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
207 212Right-handed alpha
Helix 10
AB1
A
218 235Right-handed alpha
Helix 11
AB2
A
243 254Right-handed alpha
Helix 12
AB3
A
263 274Right-handed alpha
Helix 13
AB4
A
289 294Right-handed alpha
Helix 14
AB5
A
295 299Right-handed 310
Helix 15
AB6
A
302 308Right-handed alpha
Helix 16
AB7
B
6 12Right-handed alpha
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There are 4 sheets in PDB entry 8SF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 51first strand
Strand 2
A
57 63anti-parallel
Strand 3
A
69 76anti-parallel
Strand 4
A
116 122anti-parallel
Strand 5
A
107 112anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
190 191anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
181 183anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
B
22 23anti-parallel
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