Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFI entry

There are 4 chains in PDB entry 8SFI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1307
B
 A 1 U 28
C
 C 19 G 40
D
 C 1 A 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 55 helices in PDB entry 8SFI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 67Right-handed alpha
Helix 4
AA4
A
73 87Right-handed alpha
Helix 5
AA5
A
88 111Right-handed alpha
Helix 6
AA6
A
118 133Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
140 147Right-handed alpha
Helix 9
AA9
A
152 160Right-handed alpha
Helix 10
AB1
A
161 163Right-handed 310
Helix 11
AB2
A
165 168Right-handed 310
Helix 12
AB3
A
169 181Right-handed alpha
Helix 13
AB4
A
188 195Right-handed alpha
Helix 14
AB5
A
196 215Right-handed alpha
Helix 15
AB6
A
218 230Right-handed alpha
Helix 16
AB7
A
236 241Right-handed alpha
Helix 17
AB8
A
243 249Right-handed 310
Helix 18
AB9
A
251 264Right-handed alpha
Helix 19
AC1
A
276 286Right-handed alpha
Helix 20
AC2
A
289 297Right-handed alpha
Helix 21
AC3
A
327 344Right-handed alpha
Helix 22
AC4
A
344 356Right-handed alpha
Helix 23
AC5
A
367 369Right-handed 310
Helix 24
AC6
A
370 379Right-handed alpha
Helix 25
AC7
A
383 396Right-handed alpha
Helix 26
AC8
A
402 415Right-handed alpha
Helix 27
AC9
A
420 427Right-handed alpha
Helix 28
AD1
A
430 450Right-handed alpha
Helix 29
AD2
A
460 482Right-handed alpha
Helix 30
AD3
A
493 507Right-handed alpha
Helix 31
AD4
A
509 523Right-handed alpha
Helix 32
AD5
A
548 553Right-handed alpha
Helix 33
AD6
A
600 605Right-handed alpha
Helix 34
AD7
A
612 621Right-handed alpha
Helix 35
AD8
A
639 647Right-handed alpha
Helix 36
AD9
A
656 664Right-handed alpha
Helix 37
AE1
A
665 685Right-handed alpha
Helix 38
AE2
A
700 704Right-handed 310
Helix 39
AE3
A
707 715Right-handed alpha
Helix 40
AE4
A
727 738Right-handed alpha
Helix 41
AE5
A
747 751Right-handed 310
Helix 42
AE6
A
759 769Right-handed alpha
Helix 43
AE7
A
770 776Right-handed alpha
Helix 44
AE8
A
861 865Right-handed 310
Helix 45
AE9
A
887 899Right-handed alpha
Helix 46
AF1
A
940 954Right-handed alpha
Helix 47
AF2
A
957 987Right-handed alpha
Helix 48
AF3
A
1008 1025Right-handed alpha
Helix 49
AF4
A
1090 1100Right-handed alpha
Helix 50
AF5
A
1177 1189Right-handed alpha
Helix 51
AF6
A
1200 1205Right-handed alpha
Helix 52
AF7
A
1208 1224Right-handed alpha
Helix 53
AF8
A
1250 1254Right-handed 310
Helix 54
AF9
A
1261 1284Right-handed alpha
Helix 55
AG1
A
1294 1306Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8SFI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
555 559anti-parallel
Strand 8
A
591 593anti-parallel
Strand 9
A
723 725anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
779 781anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 419anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
719 720anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
915 920anti-parallel
Strand 3
A
904 909anti-parallel
Strand 4
A
989 993parallel
Strand 5
A
1062 1065parallel
Strand 6
A
1058 1059anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1107first strand
Strand 2
A
1112 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1165first strand
Strand 2
A
1168 1176anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1228first strand
Strand 2
A
1235 1237anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il