Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFJ entry

There are 4 chains in PDB entry 8SFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1307
B
 A 1 G 29
C
 G 7 G 40
D
 C 1 C 34
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8SFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 67Right-handed alpha
Helix 4
AA4
A
73 87Right-handed alpha
Helix 5
AA5
A
88 111Right-handed alpha
Helix 6
AA6
A
118 132Right-handed alpha
Helix 7
AA7
A
133 138Right-handed 310
Helix 8
AA8
A
140 146Right-handed alpha
Helix 9
AA9
A
152 161Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
169 181Right-handed alpha
Helix 12
AB3
A
188 195Right-handed alpha
Helix 13
AB4
A
196 215Right-handed alpha
Helix 14
AB5
A
216 230Right-handed alpha
Helix 15
AB6
A
236 241Right-handed alpha
Helix 16
AB7
A
242 248Right-handed 310
Helix 17
AB8
A
251 264Right-handed alpha
Helix 18
AB9
A
276 287Right-handed alpha
Helix 19
AC1
A
289 297Right-handed alpha
Helix 20
AC2
A
548 553Right-handed alpha
Helix 21
AC3
A
600 605Right-handed alpha
Helix 22
AC4
A
612 622Right-handed alpha
Helix 23
AC5
A
639 647Right-handed alpha
Helix 24
AC6
A
656 664Right-handed alpha
Helix 25
AC7
A
665 687Right-handed alpha
Helix 26
AC8
A
700 704Right-handed 310
Helix 27
AC9
A
706 715Right-handed alpha
Helix 28
AD1
A
728 737Right-handed alpha
Helix 29
AD2
A
759 769Right-handed alpha
Helix 30
AD3
A
770 776Right-handed alpha
Helix 31
AD4
A
887 899Right-handed alpha
Helix 32
AD5
A
940 949Right-handed alpha
Helix 33
AD6
A
964 987Right-handed alpha
Helix 34
AD7
A
995 998Right-handed 310
Helix 35
AD8
A
1008 1025Right-handed alpha
Helix 36
AD9
A
1090 1100Right-handed alpha
Helix 37
AE1
A
1177 1187Right-handed alpha
Helix 38
AE2
A
1198 1206Right-handed alpha
Helix 39
AE3
A
1208 1224Right-handed alpha
Helix 40
AE4
A
1252 1254Right-handed 310
Helix 41
AE5
A
1261 1284Right-handed alpha
Helix 42
AE6
A
1294 1307Right-handed alpha
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There are 9 sheets in PDB entry 8SFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
Strand 8
A
589 597anti-parallel
Strand 9
A
719 727anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
779 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
915 920anti-parallel
Strand 3
A
904 909anti-parallel
Strand 4
A
989 993parallel
Strand 5
A
1062 1065parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1106first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1161first strand
Strand 2
A
1174 1176anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1164 1165first strand
Strand 2
A
1168 1169anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1234 1242anti-parallel
Strand 3
A
1248 1250anti-parallel
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