Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFM entry

There are 2 chains in PDB entry 8SFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 MET 1VAL 136
D
 ILE 138SER 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8SFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
12 16Right-handed 310
Helix 2
AA2
D
29 36Right-handed alpha
Helix 3
AA3
D
37 40Right-handed 310
Helix 4
AA4
D
41 59Right-handed alpha
Helix 5
AA5
D
75 87Right-handed alpha
Helix 6
AA6
D
103 107Right-handed 310
Helix 7
AA7
D
110 124Right-handed alpha
Helix 8
AA8
D
146 164Right-handed alpha
Helix 9
AA9
D
176 188Right-handed alpha
Helix 10
AB1
D
191 193Right-handed 310
Helix 11
AB2
D
199 203Right-handed 310
Helix 12
AB3
D
205 215Right-handed alpha
Helix 13
AB4
D
231 245Right-handed alpha
Helix 14
AB5
D
247 249Right-handed 310
Helix 15
AB6
D
281 286Right-handed alpha
Helix 16
AB7
D
286 294Right-handed alpha
Helix 17
AB8
D
297 306Right-handed alpha
Helix 18
AB9
D
306 313Right-handed alpha
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There are 3 sheets in PDB entry 8SFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 5first strand
Strand 2
D
8 11anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
D
63 66parallel
Strand 3
D
89 92parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
94 95first strand
Strand 2
D
136 139parallel
Strand 3
D
167 170parallel
Strand 4
D
195 198parallel
Strand 5
D
218 221parallel
Strand 6
D
251 253parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il