Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFN entry

There are 4 chains in PDB entry 8SFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1307
B
 A 1 C 36
C
 C 5 A 38
D
 T 3 G 36
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8SFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 67Right-handed alpha
Helix 4
AA4
A
73 87Right-handed alpha
Helix 5
AA5
A
88 112Right-handed alpha
Helix 6
AA6
A
118 133Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
140 147Right-handed alpha
Helix 9
AA9
A
152 161Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
169 178Right-handed alpha
Helix 12
AB3
A
188 195Right-handed alpha
Helix 13
AB4
A
197 215Right-handed alpha
Helix 14
AB5
A
217 230Right-handed alpha
Helix 15
AB6
A
236 241Right-handed alpha
Helix 16
AB7
A
242 248Right-handed 310
Helix 17
AB8
A
251 264Right-handed alpha
Helix 18
AB9
A
276 288Right-handed alpha
Helix 19
AC1
A
289 297Right-handed alpha
Helix 20
AC2
A
325 344Right-handed alpha
Helix 21
AC3
A
344 359Right-handed alpha
Helix 22
AC4
A
360 364Right-handed 310
Helix 23
AC5
A
367 369Right-handed 310
Helix 24
AC6
A
370 379Right-handed alpha
Helix 25
AC7
A
383 396Right-handed alpha
Helix 26
AC8
A
404 413Right-handed alpha
Helix 27
AC9
A
419 428Right-handed alpha
Helix 28
AD1
A
429 452Right-handed alpha
Helix 29
AD2
A
460 484Right-handed alpha
Helix 30
AD3
A
493 507Right-handed alpha
Helix 31
AD4
A
507 522Right-handed alpha
Helix 32
AD5
A
548 553Right-handed alpha
Helix 33
AD6
A
570 574Right-handed 310
Helix 34
AD7
A
600 605Right-handed alpha
Helix 35
AD8
A
612 620Right-handed alpha
Helix 36
AD9
A
639 647Right-handed alpha
Helix 37
AE1
A
656 663Right-handed alpha
Helix 38
AE2
A
665 687Right-handed alpha
Helix 39
AE3
A
700 704Right-handed 310
Helix 40
AE4
A
706 715Right-handed alpha
Helix 41
AE5
A
728 737Right-handed alpha
Helix 42
AE6
A
747 751Right-handed 310
Helix 43
AE7
A
759 769Right-handed alpha
Helix 44
AE8
A
770 776Right-handed alpha
Helix 45
AE9
A
819 831Right-handed alpha
Helix 46
AF1
A
839 846Right-handed alpha
Helix 47
AF2
A
887 899Right-handed alpha
Helix 48
AF3
A
939 957Right-handed alpha
Helix 49
AF4
A
964 987Right-handed alpha
Helix 50
AF5
A
996 1007Right-handed alpha
Helix 51
AF6
A
1010 1024Right-handed alpha
Helix 52
AF7
A
1090 1100Right-handed alpha
Helix 53
AF8
A
1177 1190Right-handed alpha
Helix 54
AF9
A
1199 1206Right-handed alpha
Helix 55
AG1
A
1208 1224Right-handed alpha
Helix 56
AG2
A
1252 1254Right-handed 310
Helix 57
AG3
A
1261 1283Right-handed alpha
Helix 58
AG4
A
1294 1307Right-handed alpha
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There are 10 sheets in PDB entry 8SFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 727first strand
Strand 2
A
589 597anti-parallel
Strand 3
A
554 559anti-parallel
Strand 4
A
562 567anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
13 23anti-parallel
Strand 7
A
868 877anti-parallel
Strand 8
A
780 781anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
719 727first strand
Strand 2
A
589 597anti-parallel
Strand 3
A
554 559anti-parallel
Strand 4
A
562 567anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
13 23anti-parallel
Strand 7
A
868 877anti-parallel
Strand 8
A
786 790anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
273 274anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 811first strand
Strand 2
A
849 853anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 930first strand
Strand 2
A
917 920anti-parallel
Strand 3
A
904 907anti-parallel
Strand 4
A
989 994parallel
Strand 5
A
1062 1066parallel
Strand 6
A
1058 1059anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1101 1106first strand
Strand 2
A
1113 1117anti-parallel
Strand 3
A
1136 1140anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1161 1162first strand
Strand 2
A
1173 1174anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1227first strand
Strand 2
A
1236 1242anti-parallel
Strand 3
A
1248 1250anti-parallel
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