Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFO entry

There are 4 chains in PDB entry 8SFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1307
B
 A 1 G 39
C
 A 1 G 40
D
 C 1 T 40
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8SFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 34Right-handed alpha
Helix 3
AA3
A
35 67Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
88 112Right-handed alpha
Helix 6
AA6
A
118 131Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
142 147Right-handed alpha
Helix 9
AA9
A
152 161Right-handed alpha
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
169 178Right-handed alpha
Helix 12
AB3
A
188 196Right-handed alpha
Helix 13
AB4
A
196 215Right-handed alpha
Helix 14
AB5
A
216 230Right-handed alpha
Helix 15
AB6
A
236 241Right-handed alpha
Helix 16
AB7
A
242 248Right-handed 310
Helix 17
AB8
A
251 264Right-handed alpha
Helix 18
AB9
A
276 287Right-handed alpha
Helix 19
AC1
A
289 298Right-handed alpha
Helix 20
AC2
A
325 344Right-handed alpha
Helix 21
AC3
A
344 355Right-handed alpha
Helix 22
AC4
A
356 359Right-handed 310
Helix 23
AC5
A
360 363Right-handed 310
Helix 24
AC6
A
370 379Right-handed alpha
Helix 25
AC7
A
383 396Right-handed alpha
Helix 26
AC8
A
404 416Right-handed alpha
Helix 27
AC9
A
420 428Right-handed alpha
Helix 28
AD1
A
428 452Right-handed alpha
Helix 29
AD2
A
460 482Right-handed alpha
Helix 30
AD3
A
493 508Right-handed alpha
Helix 31
AD4
A
509 522Right-handed alpha
Helix 32
AD5
A
548 553Right-handed alpha
Helix 33
AD6
A
600 610Right-handed alpha
Helix 34
AD7
A
612 619Right-handed alpha
Helix 35
AD8
A
639 647Right-handed alpha
Helix 36
AD9
A
656 664Right-handed alpha
Helix 37
AE1
A
665 687Right-handed alpha
Helix 38
AE2
A
694 698Right-handed 310
Helix 39
AE3
A
700 704Right-handed 310
Helix 40
AE4
A
706 715Right-handed alpha
Helix 41
AE5
A
716 719Right-handed 310
Helix 42
AE6
A
728 737Right-handed alpha
Helix 43
AE7
A
747 751Right-handed 310
Helix 44
AE8
A
759 769Right-handed alpha
Helix 45
AE9
A
770 776Right-handed alpha
Helix 46
AF1
A
861 866Right-handed 310
Helix 47
AF2
A
887 899Right-handed alpha
Helix 48
AF3
A
939 955Right-handed alpha
Helix 49
AF4
A
964 987Right-handed alpha
Helix 50
AF5
A
996 1007Right-handed alpha
Helix 51
AF6
A
1015 1025Right-handed alpha
Helix 52
AF7
A
1084 1088Right-handed 310
Helix 53
AF8
A
1090 1100Right-handed alpha
Helix 54
AF9
A
1177 1190Right-handed alpha
Helix 55
AG1
A
1199 1205Right-handed alpha
Helix 56
AG2
A
1208 1223Right-handed alpha
Helix 57
AG3
A
1250 1254Right-handed 310
Helix 58
AG4
A
1261 1282Right-handed alpha
Helix 59
AG5
A
1294 1307Right-handed alpha
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There are 9 sheets in PDB entry 8SFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
Strand 8
A
589 596anti-parallel
Strand 9
A
720 727anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
779 781anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
418 419anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
907 909first strand
Strand 2
A
915 920anti-parallel
Strand 3
A
926 931anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
990 994first strand
Strand 2
A
1062 1066parallel
Strand 3
A
1058 1059anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1106first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1162first strand
Strand 2
A
1173 1176anti-parallel
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