Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFR entry

There are 4 chains in PDB entry 8SFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 1307
B
 A 1 G 39
C
 C 7 G 40
D
 C 1 T 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 8SFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 67Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
88 112Right-handed alpha
Helix 6
AA6
A
118 130Right-handed alpha
Helix 7
AA7
A
140 147Right-handed alpha
Helix 8
AA8
A
152 160Right-handed alpha
Helix 9
AA9
A
161 163Right-handed 310
Helix 10
AB1
A
165 168Right-handed 310
Helix 11
AB2
A
169 178Right-handed alpha
Helix 12
AB3
A
188 196Right-handed alpha
Helix 13
AB4
A
196 215Right-handed alpha
Helix 14
AB5
A
217 230Right-handed alpha
Helix 15
AB6
A
238 248Right-handed 310
Helix 16
AB7
A
251 264Right-handed alpha
Helix 17
AB8
A
276 286Right-handed alpha
Helix 18
AB9
A
289 297Right-handed alpha
Helix 19
AC1
A
325 343Right-handed alpha
Helix 20
AC2
A
344 356Right-handed alpha
Helix 21
AC3
A
357 359Right-handed 310
Helix 22
AC4
A
370 379Right-handed alpha
Helix 23
AC5
A
382 396Right-handed alpha
Helix 24
AC6
A
404 415Right-handed alpha
Helix 25
AC7
A
420 428Right-handed alpha
Helix 26
AC8
A
428 452Right-handed alpha
Helix 27
AC9
A
460 482Right-handed alpha
Helix 28
AD1
A
493 508Right-handed alpha
Helix 29
AD2
A
509 522Right-handed alpha
Helix 30
AD3
A
570 574Right-handed 310
Helix 31
AD4
A
600 610Right-handed alpha
Helix 32
AD5
A
612 622Right-handed alpha
Helix 33
AD6
A
639 647Right-handed alpha
Helix 34
AD7
A
656 664Right-handed alpha
Helix 35
AD8
A
665 687Right-handed alpha
Helix 36
AD9
A
700 704Right-handed 310
Helix 37
AE1
A
706 719Right-handed alpha
Helix 38
AE2
A
728 737Right-handed alpha
Helix 39
AE3
A
759 769Right-handed alpha
Helix 40
AE4
A
770 776Right-handed alpha
Helix 41
AE5
A
861 865Right-handed 310
Helix 42
AE6
A
887 899Right-handed alpha
Helix 43
AE7
A
939 956Right-handed alpha
Helix 44
AE8
A
964 987Right-handed alpha
Helix 45
AE9
A
1008 1025Right-handed alpha
Helix 46
AF1
A
1090 1100Right-handed alpha
Helix 47
AF2
A
1177 1190Right-handed alpha
Helix 48
AF3
A
1199 1206Right-handed alpha
Helix 49
AF4
A
1208 1224Right-handed alpha
Helix 50
AF5
A
1252 1254Right-handed 310
Helix 51
AF6
A
1261 1284Right-handed alpha
Helix 52
AF7
A
1294 1307Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8SFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
Strand 8
A
589 596anti-parallel
Strand 9
A
720 727anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
780 781anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
365 366anti-parallel
Strand 3
A
484 485anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
916 920anti-parallel
Strand 3
A
904 908anti-parallel
Strand 4
A
989 993parallel
Strand 5
A
1062 1065parallel
Strand 6
A
1058 1059anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1107first strand
Strand 2
A
1112 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1162first strand
Strand 2
A
1173 1176anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1234 1242anti-parallel
Strand 3
A
1248 1250anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il