Analysis of interatomic Contacts of Structural Units in PDB entry:
8SFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SFZ entry

There are 9 chains in PDB entry 8SFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 2PHE 130
A
 ASP 2SER 124
B
 MET 1GLU 128
D
 SER 2PHE 64
D
 VAL 68HIS 231
E
 LYS 3PHE 64
E
 VAL 68HIS 232
F
 LYS 3PHE 64
F
 VAL 68THR 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8SFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
29 31Right-handed 310
Helix 2
AA2
C
63 66Right-handed 310
Helix 3
AA3
C
88 92Right-handed 310
Helix 4
AA4
A
29 31Right-handed 310
Helix 5
AA5
A
63 66Right-handed 310
Helix 6
AA6
A
75 77Right-handed 310
Helix 7
AA7
A
88 92Right-handed 310
Helix 8
AA8
B
30 32Right-handed 310
Helix 9
AA9
B
64 67Right-handed 310
Helix 10
AB1
B
76 78Right-handed 310
Helix 11
AB2
B
89 93Right-handed 310
Helix 12
AB3
D
3 7Right-handed alpha
Helix 13
AB4
D
56 61Right-handed 310
Helix 14
AB5
D
68 72Right-handed 310
Helix 15
AB6
D
75 81Right-handed 310
Helix 16
AB7
D
82 87Right-handed alpha
Helix 17
AB8
D
156 159Right-handed 310
Helix 18
AB9
E
3 9Right-handed 310
Helix 19
AC1
E
56 61Right-handed 310
Helix 20
AC2
E
68 72Right-handed 310
Helix 21
AC3
E
75 81Right-handed 310
Helix 22
AC4
E
82 87Right-handed alpha
Helix 23
AC5
E
156 159Right-handed 310
Helix 24
AC6
F
4 9Right-handed 310
Helix 25
AC7
F
56 61Right-handed 310
Helix 26
AC8
F
68 72Right-handed 310
Helix 27
AC9
F
75 81Right-handed 310
Helix 28
AD1
F
82 87Right-handed alpha
Helix 29
AD2
F
156 159Right-handed 310
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There are 12 sheets in PDB entry 8SFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
19 26anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
69 74anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
119 124parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
33 40anti-parallel
Strand 5
C
47 52anti-parallel
Strand 6
C
59 61anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
119 124parallel
Strand 3
C
93 101anti-parallel
Strand 4
C
114 115anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
69 74anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
119 123parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
33 40anti-parallel
Strand 5
A
47 52anti-parallel
Strand 6
A
59 61anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
119 123parallel
Strand 3
A
93 101anti-parallel
Strand 4
A
114 115anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
80 85anti-parallel
Strand 4
B
70 75anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
120 125parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
34 41anti-parallel
Strand 5
B
48 53anti-parallel
Strand 6
B
60 62anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
120 125parallel
Strand 3
B
94 102anti-parallel
Strand 4
B
115 116anti-parallel
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There are 12 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 22first strand
Strand 2
D
25 36anti-parallel
Strand 3
D
41 48anti-parallel
Strand 4
D
217 227anti-parallel
Strand 5
D
199 208anti-parallel
Strand 6
D
148 155anti-parallel
Strand 7
D
160 170anti-parallel
Strand 8
D
176 187anti-parallel
Strand 9
D
92 100anti-parallel
Strand 10
D
105 115anti-parallel
Strand 11
D
118 128anti-parallel
Strand 12
D
11 22parallel
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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 22first strand
Strand 2
E
25 36anti-parallel
Strand 3
E
41 48anti-parallel
Strand 4
E
217 227anti-parallel
Strand 5
E
199 208anti-parallel
Strand 6
E
148 155anti-parallel
Strand 7
E
160 170anti-parallel
Strand 8
E
176 187anti-parallel
Strand 9
E
92 100anti-parallel
Strand 10
E
105 115anti-parallel
Strand 11
E
118 128anti-parallel
Strand 12
E
12 22parallel
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There are 12 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 22first strand
Strand 2
F
25 36anti-parallel
Strand 3
F
41 48anti-parallel
Strand 4
F
217 227anti-parallel
Strand 5
F
199 208anti-parallel
Strand 6
F
148 155anti-parallel
Strand 7
F
160 170anti-parallel
Strand 8
F
176 187anti-parallel
Strand 9
F
92 100anti-parallel
Strand 10
F
105 115anti-parallel
Strand 11
F
118 128anti-parallel
Strand 12
F
12 22parallel
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