Analysis of interatomic Contacts of Structural Units in PDB entry:
8SG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SG0 entry

There are 2 chains in PDB entry 8SG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13ARG 370
B
 ALA 11ARG 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8SG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 50Right-handed alpha
Helix 2
AA2
A
66 70Right-handed 310
Helix 3
AA3
A
81 90Right-handed alpha
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
111 133Right-handed alpha
Helix 6
AA6
A
145 147Right-handed 310
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
160 165Right-handed 310
Helix 9
AA9
A
171 192Right-handed alpha
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
247 260Right-handed alpha
Helix 12
AB3
A
276 286Right-handed alpha
Helix 13
AB4
A
309 317Right-handed alpha
Helix 14
AB5
A
323 345Right-handed alpha
Helix 15
AB6
A
348 353Right-handed 310
Helix 16
AB7
B
37 50Right-handed alpha
Helix 17
AB8
B
66 70Right-handed 310
Helix 18
AB9
B
81 90Right-handed alpha
Helix 19
AC1
B
104 109Right-handed alpha
Helix 20
AC2
B
111 133Right-handed alpha
Helix 21
AC3
B
145 147Right-handed 310
Helix 22
AC4
B
148 152Right-handed 310
Helix 23
AC5
B
160 165Right-handed 310
Helix 24
AC6
B
171 192Right-handed alpha
Helix 25
AC7
B
216 228Right-handed alpha
Helix 26
AC8
B
247 260Right-handed alpha
Helix 27
AC9
B
276 286Right-handed alpha
Helix 28
AD1
B
309 317Right-handed alpha
Helix 29
AD2
B
323 345Right-handed alpha
Helix 30
AD3
B
348 354Right-handed 310
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There are 8 sheets in PDB entry 8SG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
53 58parallel
Strand 3
A
29 33parallel
Strand 4
A
94 97parallel
Strand 5
A
137 143parallel
Strand 6
A
194 200parallel
Strand 7
A
266 268parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
245 246parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 235first strand
Strand 2
A
293 296parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
274 275anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
53 58parallel
Strand 3
B
29 33parallel
Strand 4
B
94 97parallel
Strand 5
B
137 143parallel
Strand 6
B
194 200parallel
Strand 7
B
266 268parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
245 246parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 235first strand
Strand 2
B
293 296parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 243first strand
Strand 2
B
273 275anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il