Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SGD entry

There are 4 chains in PDB entry 8SGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 12ALA 302
B
 PRO 118LEU 409
C
 TYR 12ALA 302
D
 PRO 118LEU 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8SGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 16Right-handed 310
Helix 2
AA2
A
17 30Right-handed alpha
Helix 3
AA3
A
44 53Right-handed alpha
Helix 4
AA4
A
65 69Right-handed 310
Helix 5
AA5
A
111 130Right-handed alpha
Helix 6
AA6
A
158 169Right-handed alpha
Helix 7
AA7
A
180 184Right-handed 310
Helix 8
AA8
A
185 204Right-handed alpha
Helix 9
AA9
A
216 228Right-handed alpha
Helix 10
AB1
A
267 278Right-handed alpha
Helix 11
AB2
A
279 290Right-handed alpha
Helix 12
AB3
A
290 302Right-handed alpha
Helix 13
AB4
B
131 141Right-handed alpha
Helix 14
AB5
B
142 147Right-handed 310
Helix 15
AB6
B
215 238Right-handed alpha
Helix 16
AB7
B
265 273Right-handed alpha
Helix 17
AB8
B
287 291Right-handed 310
Helix 18
AB9
B
292 310Right-handed alpha
Helix 19
AC1
B
376 385Right-handed alpha
Helix 20
AC2
B
388 399Right-handed alpha
Helix 21
AC3
B
399 409Right-handed alpha
Helix 22
AC4
C
14 16Right-handed 310
Helix 23
AC5
C
17 30Right-handed alpha
Helix 24
AC6
C
44 53Right-handed alpha
Helix 25
AC7
C
65 69Right-handed 310
Helix 26
AC8
C
111 130Right-handed alpha
Helix 27
AC9
C
158 169Right-handed alpha
Helix 28
AD1
C
180 184Right-handed 310
Helix 29
AD2
C
185 203Right-handed alpha
Helix 30
AD3
C
216 229Right-handed alpha
Helix 31
AD4
C
267 276Right-handed alpha
Helix 32
AD5
C
279 290Right-handed alpha
Helix 33
AD6
C
290 302Right-handed alpha
Helix 34
AD7
D
131 141Right-handed alpha
Helix 35
AD8
D
215 237Right-handed alpha
Helix 36
AD9
D
265 276Right-handed alpha
Helix 37
AE1
D
287 291Right-handed 310
Helix 38
AE2
D
292 310Right-handed alpha
Helix 39
AE3
D
376 385Right-handed alpha
Helix 40
AE4
D
388 399Right-handed alpha
Helix 41
AE5
D
399 411Right-handed alpha
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There are 8 sheets in PDB entry 8SGD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 86first strand
Strand 2
A
89 97anti-parallel
Strand 3
A
31 38parallel
Strand 4
A
145 150parallel
Strand 5
A
174 178parallel
Strand 6
A
232 233parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
257 259anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
183 192anti-parallel
Strand 3
B
197 206anti-parallel
Strand 4
B
119 125parallel
Strand 5
B
252 257parallel
Strand 6
B
281 285parallel
Strand 7
B
340 341parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 350first strand
Strand 2
B
356 362anti-parallel
Strand 3
B
365 368anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 86first strand
Strand 2
C
89 97anti-parallel
Strand 3
C
31 38parallel
Strand 4
C
145 150parallel
Strand 5
C
174 178parallel
Strand 6
C
232 233parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 243first strand
Strand 2
C
246 252anti-parallel
Strand 3
C
257 259anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 193first strand
Strand 2
D
196 206anti-parallel
Strand 3
D
119 125parallel
Strand 4
D
252 257parallel
Strand 5
D
281 285parallel
Strand 6
D
340 341parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
348 350first strand
Strand 2
D
356 362anti-parallel
Strand 3
D
365 368anti-parallel
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