Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SGI entry

There are 3 chains in PDB entry 8SGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 17ILE 935
L
 GLN 0GLY 109
H
 GLN 1SER 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8SGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 72Right-handed alpha
Helix 2
AA2
A
98 110Right-handed alpha
Helix 3
AA3
A
110 124Right-handed alpha
Helix 4
AA4
A
130 145Right-handed alpha
Helix 5
AA5
A
145 155Right-handed alpha
Helix 6
AA6
A
165 189Right-handed alpha
Helix 7
AA7
A
196 205Right-handed alpha
Helix 8
AA8
A
205 220Right-handed alpha
Helix 9
AA9
A
223 227Right-handed 310
Helix 10
AB1
A
601 608Right-handed alpha
Helix 11
AB2
A
656 666Right-handed alpha
Helix 12
AB3
A
684 697Right-handed alpha
Helix 13
AB4
A
708 717Right-handed alpha
Helix 14
AB5
A
738 754Right-handed alpha
Helix 15
AB6
A
755 757Right-handed 310
Helix 16
AB7
A
761 764Right-handed 310
Helix 17
AB8
A
765 795Right-handed alpha
Helix 18
AB9
A
797 805Right-handed alpha
Helix 19
AC1
A
805 811Right-handed alpha
Helix 20
AC2
A
811 825Right-handed alpha
Helix 21
AC3
A
828 845Right-handed alpha
Helix 22
AC4
A
845 861Right-handed alpha
Helix 23
AC5
A
868 893Right-handed alpha
Helix 24
AC6
A
905 932Right-handed alpha
Helix 25
AC7
L
80 84Right-handed 310
Helix 26
AC8
H
28 32Right-handed 310
Helix 27
AC9
H
87 91Right-handed 310
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There are 13 sheets in PDB entry 8SGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
89 96anti-parallel
Strand 3
A
239 245parallel
Strand 4
A
228 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
902 903anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
865 866anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 443first strand
Strand 2
A
389 397anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
484 486parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 384first strand
Strand 2
A
491 497parallel
Strand 3
A
454 465anti-parallel
Strand 4
A
405 412anti-parallel
Strand 5
A
426 431anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
568 574first strand
Strand 2
A
520 527anti-parallel
Strand 3
A
504 507anti-parallel
Strand 4
A
670 671parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
676 682parallel
Strand 3
A
584 591anti-parallel
Strand 4
A
534 542anti-parallel
Strand 5
A
557 562anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
676 682parallel
Strand 3
A
584 591anti-parallel
Strand 4
A
534 542anti-parallel
Strand 5
A
595 600anti-parallel
Strand 6
A
623 628anti-parallel
Strand 7
A
613 620anti-parallel
Strand 8
A
640 641anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
3 4first strand
Strand 2
L
16 23anti-parallel
Strand 3
L
71 77anti-parallel
Strand 4
L
63 68anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 11first strand
Strand 2
L
103 107parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
35 40anti-parallel
Strand 5
L
44 50anti-parallel
Strand 6
L
54 55anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
8 11first strand
Strand 2
L
103 107parallel
Strand 3
L
85 92anti-parallel
Strand 4
L
97 99anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
115 119parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 60anti-parallel
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