Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SGP entry

There are 4 chains in PDB entry 8SGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	LYS 420
B	GLY 36	LYS 420
C	GLY 36	LYS 420
D	GLY 36	LYS 420

There are 64 helices in PDB entry 8SGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	71	Right-handed alpha
Helix 2	AA2	A	74	84	Right-handed alpha
Helix 3	AA3	A	92	96	Right-handed 310
Helix 4	AA4	A	101	116	Right-handed alpha
Helix 5	AA5	A	116	136	Right-handed alpha
Helix 6	AA6	A	138	152	Right-handed alpha
Helix 7	AA7	A	168	172	Right-handed 310
Helix 8	AA8	A	214	217	Right-handed 310
Helix 9	AA9	A	260	262	Right-handed 310
Helix 10	AB1	A	268	304	Right-handed alpha
Helix 11	AB2	A	316	346	Right-handed alpha
Helix 12	AB3	A	350	377	Right-handed alpha
Helix 13	AB4	A	377	382	Right-handed alpha
Helix 14	AB5	A	386	394	Right-handed alpha
Helix 15	AB6	A	395	399	Right-handed 310
Helix 16	AB7	A	403	418	Right-handed alpha
Helix 17	AB8	B	42	71	Right-handed alpha
Helix 18	AB9	B	74	84	Right-handed alpha
Helix 19	AC1	B	92	96	Right-handed 310
Helix 20	AC2	B	101	116	Right-handed alpha
Helix 21	AC3	B	116	136	Right-handed alpha
Helix 22	AC4	B	138	152	Right-handed alpha
Helix 23	AC5	B	168	172	Right-handed 310
Helix 24	AC6	B	214	217	Right-handed 310
Helix 25	AC7	B	260	262	Right-handed 310
Helix 26	AC8	B	268	304	Right-handed alpha
Helix 27	AC9	B	316	346	Right-handed alpha
Helix 28	AD1	B	350	377	Right-handed alpha
Helix 29	AD2	B	377	382	Right-handed alpha
Helix 30	AD3	B	386	394	Right-handed alpha
Helix 31	AD4	B	395	399	Right-handed 310
Helix 32	AD5	B	403	418	Right-handed alpha
Helix 33	AD6	C	42	71	Right-handed alpha
Helix 34	AD7	C	74	84	Right-handed alpha
Helix 35	AD8	C	92	96	Right-handed 310
Helix 36	AD9	C	101	116	Right-handed alpha
Helix 37	AE1	C	116	136	Right-handed alpha
Helix 38	AE2	C	138	152	Right-handed alpha
Helix 39	AE3	C	168	172	Right-handed 310
Helix 40	AE4	C	214	217	Right-handed 310
Helix 41	AE5	C	260	262	Right-handed 310
Helix 42	AE6	C	268	304	Right-handed alpha
Helix 43	AE7	C	316	346	Right-handed alpha
Helix 44	AE8	C	350	377	Right-handed alpha
Helix 45	AE9	C	377	382	Right-handed alpha
Helix 46	AF1	C	386	394	Right-handed alpha
Helix 47	AF2	C	395	399	Right-handed 310
Helix 48	AF3	C	403	418	Right-handed alpha
Helix 49	AF4	D	42	71	Right-handed alpha
Helix 50	AF5	D	74	84	Right-handed alpha
Helix 51	AF6	D	92	96	Right-handed 310
Helix 52	AF7	D	101	116	Right-handed alpha
Helix 53	AF8	D	116	136	Right-handed alpha
Helix 54	AF9	D	138	152	Right-handed alpha
Helix 55	AG1	D	168	172	Right-handed 310
Helix 56	AG2	D	214	217	Right-handed 310
Helix 57	AG3	D	260	262	Right-handed 310
Helix 58	AG4	D	268	304	Right-handed alpha
Helix 59	AG5	D	316	346	Right-handed alpha
Helix 60	AG6	D	350	377	Right-handed alpha
Helix 61	AG7	D	377	382	Right-handed alpha
Helix 62	AG8	D	386	394	Right-handed alpha
Helix 63	AG9	D	395	399	Right-handed 310
Helix 64	AH1	D	403	418	Right-handed alpha

There are 12 sheets in PDB entry 8SGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	159	first strand
Strand 2	A	200	206	parallel
Strand 3	A	219	225	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	179	first strand
Strand 2	A	182	193	anti-parallel
Strand 3	A	247	258	anti-parallel
Strand 4	A	231	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	311	312	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	159	first strand
Strand 2	B	200	206	parallel
Strand 3	B	219	225	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	179	first strand
Strand 2	B	182	193	anti-parallel
Strand 3	B	247	258	anti-parallel
Strand 4	B	231	236	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	308	first strand
Strand 2	B	311	312	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	200	206	parallel
Strand 3	C	219	225	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	179	first strand
Strand 2	C	182	193	anti-parallel
Strand 3	C	247	258	anti-parallel
Strand 4	C	231	236	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	307	308	first strand
Strand 2	C	311	312	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	159	first strand
Strand 2	D	200	206	parallel
Strand 3	D	219	225	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	179	first strand
Strand 2	D	182	193	anti-parallel
Strand 3	D	247	258	anti-parallel
Strand 4	D	231	236	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	307	308	first strand
Strand 2	D	311	312	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGP