Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SGR entry

There are 4 chains in PDB entry 8SGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 34	HIS 426
B	SER 34	HIS 426
C	SER 34	HIS 426
D	SER 34	HIS 426

There are 80 helices in PDB entry 8SGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	44	Right-handed alpha
Helix 2	AA2	A	46	63	Right-handed alpha
Helix 3	AA3	A	64	66	Right-handed 310
Helix 4	AA4	A	67	75	Right-handed alpha
Helix 5	AA5	A	79	91	Right-handed alpha
Helix 6	AA6	A	98	102	Right-handed 310
Helix 7	AA7	A	107	122	Right-handed alpha
Helix 8	AA8	A	122	134	Right-handed alpha
Helix 9	AA9	A	136	143	Right-handed alpha
Helix 10	AB1	A	145	159	Right-handed alpha
Helix 11	AB2	A	175	179	Right-handed 310
Helix 12	AB3	A	220	224	Right-handed alpha
Helix 13	AB4	A	274	291	Right-handed alpha
Helix 14	AB5	A	291	310	Right-handed alpha
Helix 15	AB6	A	322	353	Right-handed alpha
Helix 16	AB7	A	356	383	Right-handed alpha
Helix 17	AB8	A	384	388	Right-handed 310
Helix 18	AB9	A	392	401	Right-handed alpha
Helix 19	AC1	A	402	405	Right-handed 310
Helix 20	AC2	A	409	424	Right-handed alpha
Helix 21	AC3	B	39	44	Right-handed alpha
Helix 22	AC4	B	46	63	Right-handed alpha
Helix 23	AC5	B	64	66	Right-handed 310
Helix 24	AC6	B	67	75	Right-handed alpha
Helix 25	AC7	B	79	91	Right-handed alpha
Helix 26	AC8	B	98	102	Right-handed 310
Helix 27	AC9	B	107	122	Right-handed alpha
Helix 28	AD1	B	122	134	Right-handed alpha
Helix 29	AD2	B	136	143	Right-handed alpha
Helix 30	AD3	B	145	159	Right-handed alpha
Helix 31	AD4	B	175	179	Right-handed 310
Helix 32	AD5	B	220	224	Right-handed alpha
Helix 33	AD6	B	274	291	Right-handed alpha
Helix 34	AD7	B	291	310	Right-handed alpha
Helix 35	AD8	B	322	353	Right-handed alpha
Helix 36	AD9	B	356	383	Right-handed alpha
Helix 37	AE1	B	384	388	Right-handed 310
Helix 38	AE2	B	392	401	Right-handed alpha
Helix 39	AE3	B	402	405	Right-handed 310
Helix 40	AE4	B	409	424	Right-handed alpha
Helix 41	AE5	C	39	44	Right-handed alpha
Helix 42	AE6	C	46	63	Right-handed alpha
Helix 43	AE7	C	64	66	Right-handed 310
Helix 44	AE8	C	67	75	Right-handed alpha
Helix 45	AE9	C	79	91	Right-handed alpha
Helix 46	AF1	C	98	102	Right-handed 310
Helix 47	AF2	C	107	122	Right-handed alpha
Helix 48	AF3	C	122	134	Right-handed alpha
Helix 49	AF4	C	136	143	Right-handed alpha
Helix 50	AF5	C	145	159	Right-handed alpha
Helix 51	AF6	C	175	179	Right-handed 310
Helix 52	AF7	C	220	224	Right-handed alpha
Helix 53	AF8	C	274	291	Right-handed alpha
Helix 54	AF9	C	291	310	Right-handed alpha
Helix 55	AG1	C	322	353	Right-handed alpha
Helix 56	AG2	C	356	383	Right-handed alpha
Helix 57	AG3	C	384	388	Right-handed 310
Helix 58	AG4	C	392	401	Right-handed alpha
Helix 59	AG5	C	402	405	Right-handed 310
Helix 60	AG6	C	409	424	Right-handed alpha
Helix 61	AG7	D	39	44	Right-handed alpha
Helix 62	AG8	D	46	63	Right-handed alpha
Helix 63	AG9	D	64	66	Right-handed 310
Helix 64	AH1	D	67	75	Right-handed alpha
Helix 65	AH2	D	79	91	Right-handed alpha
Helix 66	AH3	D	98	102	Right-handed 310
Helix 67	AH4	D	107	122	Right-handed alpha
Helix 68	AH5	D	122	134	Right-handed alpha
Helix 69	AH6	D	136	143	Right-handed alpha
Helix 70	AH7	D	145	159	Right-handed alpha
Helix 71	AH8	D	175	179	Right-handed 310
Helix 72	AH9	D	220	224	Right-handed alpha
Helix 73	AI1	D	274	291	Right-handed alpha
Helix 74	AI2	D	291	310	Right-handed alpha
Helix 75	AI3	D	322	353	Right-handed alpha
Helix 76	AI4	D	356	383	Right-handed alpha
Helix 77	AI5	D	384	388	Right-handed 310
Helix 78	AI6	D	392	401	Right-handed alpha
Helix 79	AI7	D	402	405	Right-handed 310
Helix 80	AI8	D	409	424	Right-handed alpha

There are 12 sheets in PDB entry 8SGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	166	first strand
Strand 2	A	207	213	parallel
Strand 3	A	225	231	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	189	200	anti-parallel
Strand 3	A	253	264	anti-parallel
Strand 4	A	237	239	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	317	318	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	166	first strand
Strand 2	B	207	213	parallel
Strand 3	B	225	231	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	186	first strand
Strand 2	B	189	200	anti-parallel
Strand 3	B	253	264	anti-parallel
Strand 4	B	237	239	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	317	318	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	166	first strand
Strand 2	C	207	213	parallel
Strand 3	C	225	231	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	186	first strand
Strand 2	C	189	200	anti-parallel
Strand 3	C	253	264	anti-parallel
Strand 4	C	237	239	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	314	first strand
Strand 2	C	317	318	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	166	first strand
Strand 2	D	207	213	parallel
Strand 3	D	225	231	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	186	first strand
Strand 2	D	189	200	anti-parallel
Strand 3	D	253	264	anti-parallel
Strand 4	D	237	239	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	314	first strand
Strand 2	D	317	318	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGR