Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SGS entry

There are 4 chains in PDB entry 8SGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 31	ARG 411
B	SER 31	ARG 411
C	SER 31	ARG 411
D	SER 31	ARG 411

There are 68 helices in PDB entry 8SGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	64	Right-handed alpha
Helix 2	AA2	A	67	77	Right-handed alpha
Helix 3	AA3	A	85	89	Right-handed 310
Helix 4	AA4	A	94	109	Right-handed alpha
Helix 5	AA5	A	109	121	Right-handed alpha
Helix 6	AA6	A	123	131	Right-handed alpha
Helix 7	AA7	A	132	140	Right-handed alpha
Helix 8	AA8	A	140	145	Right-handed alpha
Helix 9	AA9	A	162	166	Right-handed 310
Helix 10	AB1	A	251	253	Right-handed 310
Helix 11	AB2	A	259	297	Right-handed alpha
Helix 12	AB3	A	307	337	Right-handed alpha
Helix 13	AB4	A	341	368	Right-handed alpha
Helix 14	AB5	A	368	373	Right-handed alpha
Helix 15	AB6	A	377	387	Right-handed alpha
Helix 16	AB7	A	388	390	Right-handed 310
Helix 17	AB8	A	394	411	Right-handed alpha
Helix 18	AB9	B	35	64	Right-handed alpha
Helix 19	AC1	B	67	77	Right-handed alpha
Helix 20	AC2	B	85	89	Right-handed 310
Helix 21	AC3	B	94	109	Right-handed alpha
Helix 22	AC4	B	109	121	Right-handed alpha
Helix 23	AC5	B	123	131	Right-handed alpha
Helix 24	AC6	B	132	140	Right-handed alpha
Helix 25	AC7	B	140	145	Right-handed alpha
Helix 26	AC8	B	162	166	Right-handed 310
Helix 27	AC9	B	251	253	Right-handed 310
Helix 28	AD1	B	259	297	Right-handed alpha
Helix 29	AD2	B	307	337	Right-handed alpha
Helix 30	AD3	B	341	368	Right-handed alpha
Helix 31	AD4	B	368	373	Right-handed alpha
Helix 32	AD5	B	377	387	Right-handed alpha
Helix 33	AD6	B	388	390	Right-handed 310
Helix 34	AD7	B	394	411	Right-handed alpha
Helix 35	AD8	C	35	64	Right-handed alpha
Helix 36	AD9	C	67	77	Right-handed alpha
Helix 37	AE1	C	85	89	Right-handed 310
Helix 38	AE2	C	94	109	Right-handed alpha
Helix 39	AE3	C	109	121	Right-handed alpha
Helix 40	AE4	C	123	131	Right-handed alpha
Helix 41	AE5	C	132	140	Right-handed alpha
Helix 42	AE6	C	140	145	Right-handed alpha
Helix 43	AE7	C	162	166	Right-handed 310
Helix 44	AE8	C	251	253	Right-handed 310
Helix 45	AE9	C	259	297	Right-handed alpha
Helix 46	AF1	C	307	337	Right-handed alpha
Helix 47	AF2	C	341	368	Right-handed alpha
Helix 48	AF3	C	368	373	Right-handed alpha
Helix 49	AF4	C	377	387	Right-handed alpha
Helix 50	AF5	C	388	390	Right-handed 310
Helix 51	AF6	C	394	411	Right-handed alpha
Helix 52	AF7	D	35	64	Right-handed alpha
Helix 53	AF8	D	67	77	Right-handed alpha
Helix 54	AF9	D	85	89	Right-handed 310
Helix 55	AG1	D	94	109	Right-handed alpha
Helix 56	AG2	D	109	121	Right-handed alpha
Helix 57	AG3	D	123	131	Right-handed alpha
Helix 58	AG4	D	132	140	Right-handed alpha
Helix 59	AG5	D	140	145	Right-handed alpha
Helix 60	AG6	D	162	166	Right-handed 310
Helix 61	AG7	D	251	253	Right-handed 310
Helix 62	AG8	D	259	297	Right-handed alpha
Helix 63	AG9	D	307	337	Right-handed alpha
Helix 64	AH1	D	341	368	Right-handed alpha
Helix 65	AH2	D	368	373	Right-handed alpha
Helix 66	AH3	D	377	387	Right-handed alpha
Helix 67	AH4	D	388	390	Right-handed 310
Helix 68	AH5	D	394	411	Right-handed alpha

There are 16 sheets in PDB entry 8SGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	194	200	parallel
Strand 3	A	210	216	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	176	182	anti-parallel
Strand 3	A	241	249	anti-parallel
Strand 4	A	222	224	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	238	239	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	299	first strand
Strand 2	A	302	303	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	194	200	parallel
Strand 3	B	210	216	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	241	249	anti-parallel
Strand 4	B	222	224	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	238	239	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	299	first strand
Strand 2	B	302	303	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	153	first strand
Strand 2	C	194	200	parallel
Strand 3	C	210	216	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	171	first strand
Strand 2	C	176	182	anti-parallel
Strand 3	C	241	249	anti-parallel
Strand 4	C	222	224	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	238	239	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	299	first strand
Strand 2	C	302	303	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	153	first strand
Strand 2	D	194	200	parallel
Strand 3	D	210	216	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	171	first strand
Strand 2	D	176	182	anti-parallel
Strand 3	D	241	249	anti-parallel
Strand 4	D	222	224	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	238	239	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	299	first strand
Strand 2	D	302	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SGS