Analysis of interatomic Contacts of Structural Units in PDB entry:
8SH0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SH0 entry

There are 2 chains in PDB entry 8SH0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6ALA 299
B
 C -7 G 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 8SH0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 69Right-handed 310
Helix 2
AA2
A
126 144Right-handed alpha
Helix 3
AA3
A
152 156Right-handed 310
Helix 4
AA4
A
199 203Right-handed 310
Helix 5
AA5
A
206 213Right-handed alpha
Helix 6
AA6
A
214 217Right-handed 310
Helix 7
AA7
A
225 233Right-handed alpha
Helix 8
AA8
A
269 273Right-handed 310
Helix 9
AA9
A
282 299Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8SH0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 37first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
92 106parallel
Strand 5
A
78 89anti-parallel
Strand 6
A
21 37anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 278first strand
Strand 2
A
238 250anti-parallel
Strand 3
A
259 265anti-parallel
Strand 4
A
218 223parallel
Strand 5
A
178 184anti-parallel
Strand 6
A
160 173anti-parallel
Strand 7
A
238 250anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il