Analysis of interatomic Contacts of Structural Units in PDB entry:
8SH2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SH2 entry

There are 12 chains in PDB entry 8SH2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 25	SER 406
E	MET 1	PRO 96
F	MET 17	CYS 112
G	MET 1	PRO 96
H	MET 17	CYS 112
I	MET 1	GLU 98
J	MET 17	CYS 112
K	MET 1	GLU 98
L	MET 17	CYS 112
C	GLU 25	SER 406
A	MET 24	SER 406
D	SER 23	SER 406

There are 35 helices in PDB entry 8SH2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	179	184	Right-handed 310
Helix 2	AA2	B	344	348	Right-handed 310
Helix 3	AA3	B	363	372	Right-handed alpha
Helix 4	AA4	B	388	394	Right-handed alpha
Helix 5	AA5	B	394	399	Right-handed alpha
Helix 6	AA6	E	23	36	Right-handed alpha
Helix 7	AA7	F	33	37	Right-handed alpha
Helix 8	AA8	F	40	46	Right-handed alpha
Helix 9	AA9	F	66	83	Right-handed alpha
Helix 10	AB1	F	99	111	Right-handed alpha
Helix 11	AB2	G	23	36	Right-handed alpha
Helix 12	AB3	H	39	46	Right-handed alpha
Helix 13	AB4	H	66	83	Right-handed alpha
Helix 14	AB5	H	99	109	Right-handed alpha
Helix 15	AB6	I	23	36	Right-handed alpha
Helix 16	AB7	J	33	37	Right-handed 310
Helix 17	AB8	J	39	46	Right-handed alpha
Helix 18	AB9	J	66	84	Right-handed alpha
Helix 19	AC1	J	99	110	Right-handed alpha
Helix 20	AC2	K	23	36	Right-handed alpha
Helix 21	AC3	K	56	61	Right-handed alpha
Helix 22	AC4	L	33	39	Right-handed alpha
Helix 23	AC5	L	39	46	Right-handed alpha
Helix 24	AC6	L	66	82	Right-handed alpha
Helix 25	AC7	L	96	111	Right-handed alpha
Helix 26	AC8	C	179	184	Right-handed 310
Helix 27	AC9	C	363	376	Right-handed alpha
Helix 28	AD1	A	178	185	Right-handed alpha
Helix 29	AD2	A	363	374	Right-handed alpha
Helix 30	AD3	A	379	385	Right-handed alpha
Helix 31	AD4	A	387	397	Right-handed alpha
Helix 32	AD5	D	180	185	Right-handed alpha
Helix 33	AD6	D	363	375	Right-handed alpha
Helix 34	AD7	D	379	385	Right-handed alpha
Helix 35	AD8	D	387	397	Right-handed alpha

There are 41 sheets in PDB entry 8SH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	39	first strand
Strand 2	B	44	47	anti-parallel
Strand 3	B	68	72	anti-parallel
Strand 4	B	77	81	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	60	62	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	130	135	parallel
Strand 3	B	118	122	anti-parallel
Strand 4	B	102	106	anti-parallel
Strand 5	B	95	99	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	113	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	162	164	anti-parallel
Strand 3	B	190	192	anti-parallel
Strand 4	B	175	177	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	153	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	196	199	anti-parallel
Strand 4	B	204	206	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	254	257	parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	229	233	anti-parallel
Strand 5	B	222	226	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	277	first strand
Strand 2	B	280	287	anti-parallel
Strand 3	B	293	301	anti-parallel
Strand 4	B	306	310	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	326	first strand
Strand 2	B	332	336	anti-parallel
Strand 3	B	354	357	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	12	19	anti-parallel
Strand 3	F	28	32	parallel
Strand 4	F	18	22	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	45	first strand
Strand 2	G	74	78	anti-parallel
Strand 3	G	3	9	parallel
Strand 4	G	12	18	anti-parallel
Strand 5	H	28	32	parallel
Strand 6	H	18	22	anti-parallel
Strand 7	H	59	61	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	44	45	first strand
Strand 2	I	73	77	anti-parallel
Strand 3	I	2	9	parallel
Strand 4	I	12	19	anti-parallel
Strand 5	J	28	30	parallel
Strand 6	J	20	22	anti-parallel
Strand 7	J	59	61	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	13	19	first strand
Strand 2	K	2	8	anti-parallel
Strand 3	K	74	78	parallel
Strand 4	K	43	45	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	32	first strand
Strand 2	L	18	22	anti-parallel
Strand 3	L	59	61	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	39	first strand
Strand 2	C	43	47	anti-parallel
Strand 3	C	67	72	anti-parallel
Strand 4	C	77	82	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	60	62	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	131	135	parallel
Strand 3	C	118	122	anti-parallel
Strand 4	C	102	106	anti-parallel
Strand 5	C	95	99	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	162	164	anti-parallel
Strand 3	C	190	192	anti-parallel
Strand 4	C	176	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	153	first strand
Strand 2	C	156	160	anti-parallel
Strand 3	C	196	199	anti-parallel
Strand 4	C	205	206	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	212	first strand
Strand 2	C	254	257	parallel
Strand 3	C	242	249	anti-parallel
Strand 4	C	229	235	anti-parallel
Strand 5	C	222	226	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	275	first strand
Strand 2	C	280	287	anti-parallel
Strand 3	C	293	301	anti-parallel
Strand 4	C	306	310	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	326	first strand
Strand 2	C	332	336	anti-parallel
Strand 3	C	354	357	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	77	82	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	60	62	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	131	135	parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	102	106	anti-parallel
Strand 5	A	95	99	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	113	114	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	175	177	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	153	first strand
Strand 2	A	156	164	anti-parallel
Strand 3	A	190	199	anti-parallel
Strand 4	A	204	206	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	211	212	first strand
Strand 2	A	254	257	parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	229	233	anti-parallel
Strand 5	A	222	226	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	306	309	parallel
Strand 3	A	293	301	anti-parallel
Strand 4	A	280	287	anti-parallel
Strand 5	A	273	277	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	326	first strand
Strand 2	A	331	335	anti-parallel
Strand 3	A	355	358	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	43	47	anti-parallel
Strand 3	D	67	72	anti-parallel
Strand 4	D	77	82	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	60	62	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	131	135	parallel
Strand 3	D	118	122	anti-parallel
Strand 4	D	102	106	anti-parallel
Strand 5	D	95	99	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	163	164	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	153	first strand
Strand 2	D	156	160	anti-parallel
Strand 3	D	195	199	anti-parallel
Strand 4	D	204	206	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	190	192	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	211	212	first strand
Strand 2	D	254	258	parallel
Strand 3	D	240	249	anti-parallel
Strand 4	D	229	237	anti-parallel
Strand 5	D	222	226	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	273	277	first strand
Strand 2	D	280	287	anti-parallel
Strand 3	D	293	301	anti-parallel
Strand 4	D	306	309	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	326	first strand
Strand 2	D	331	335	anti-parallel
Strand 3	D	355	358	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	350	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SH2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SH2