Analysis of interatomic Contacts of Structural Units in PDB entry:
8SHI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SHI entry

There are 11 chains in PDB entry 8SHI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	TRP 274
B	ILE 1	MET 99
C	VAL 1	ARG 5
C	LEU 7	LEU 9
D	SER 2	TRP 274
E	ILE 1	MET 99
F	VAL 1	ARG 5
F	LEU 7	LEU 9
G	GLN 18	PHE 201
H	GLY 3	ALA 242
I	GLN 18	LYS 79

There are 20 helices in PDB entry 8SHI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	54	Right-handed alpha
Helix 2	AA2	A	56	86	Right-handed alpha
Helix 3	AA3	A	137	150	Right-handed alpha
Helix 4	AA4	A	151	162	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	253	255	Right-handed 310
Helix 8	AA8	D	56	86	Right-handed alpha
Helix 9	AA9	D	139	150	Right-handed alpha
Helix 10	AB1	D	151	162	Right-handed alpha
Helix 11	AB2	D	162	175	Right-handed alpha
Helix 12	AB3	D	175	180	Right-handed alpha
Helix 13	AB4	G	89	93	Right-handed 310
Helix 14	AB5	G	196	201	Right-handed alpha
Helix 15	AB6	H	115	119	Right-handed 310
Helix 16	AB7	H	130	138	Right-handed alpha
Helix 17	AB8	H	197	202	Right-handed alpha
Helix 18	AB9	J	115	119	Right-handed 310
Helix 19	AC1	J	130	138	Right-handed alpha
Helix 20	AC2	J	197	202	Right-handed alpha

There are 31 sheets in PDB entry 8SHI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	4	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	228	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	192	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	219	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	31	37	anti-parallel
Strand 3	D	21	28	anti-parallel
Strand 4	D	4	12	anti-parallel
Strand 5	D	94	103	anti-parallel
Strand 6	D	109	118	anti-parallel
Strand 7	D	121	126	anti-parallel
Strand 8	D	133	135	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	192	first strand
Strand 2	D	198	208	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	229	230	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	189	192	first strand
Strand 2	D	198	208	anti-parallel
Strand 3	D	241	250	anti-parallel
Strand 4	D	234	235	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	219	first strand
Strand 2	D	257	263	anti-parallel
Strand 3	D	270	272	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	50	51	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	11	first strand
Strand 2	E	21	30	anti-parallel
Strand 3	E	62	70	anti-parallel
Strand 4	E	55	56	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	45	first strand
Strand 2	E	36	41	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	91	94	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	23	first strand
Strand 2	G	118	123	parallel
Strand 3	G	94	102	anti-parallel
Strand 4	G	38	46	anti-parallel
Strand 5	G	53	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	28	33	first strand
Strand 2	G	80	85	anti-parallel
Strand 3	G	70	74	anti-parallel
Strand 4	G	64	67	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	168	first strand
Strand 2	G	181	190	anti-parallel
Strand 3	G	145	150	anti-parallel
Strand 4	G	132	138	anti-parallel
Strand 5	H	123	128	anti-parallel
Strand 6	H	139	149	anti-parallel
Strand 7	H	187	196	anti-parallel
Strand 8	H	169	171	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	172	176	first strand
Strand 2	G	181	190	anti-parallel
Strand 3	G	145	150	anti-parallel
Strand 4	G	132	138	anti-parallel
Strand 5	H	123	128	anti-parallel
Strand 6	H	139	149	anti-parallel
Strand 7	H	187	196	anti-parallel
Strand 8	H	176	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	76	78	anti-parallel
Strand 4	H	64	66	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	108	113	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	31	37	anti-parallel
Strand 5	H	43	51	anti-parallel
Strand 6	H	54	57	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	108	113	parallel
Strand 3	H	87	94	anti-parallel
Strand 4	H	103	104	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	165	first strand
Strand 2	H	154	160	anti-parallel
Strand 3	H	206	213	anti-parallel
Strand 4	H	232	239	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	20	21	first strand
Strand 2	I	118	121	parallel
Strand 3	I	94	102	anti-parallel
Strand 4	I	38	47	anti-parallel
Strand 5	I	50	59	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	28	33	first strand
Strand 2	I	80	85	anti-parallel
Strand 3	I	70	74	anti-parallel
Strand 4	I	64	67	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	135	first strand
Strand 2	I	145	150	anti-parallel
Strand 3	I	181	190	anti-parallel
Strand 4	I	166	168	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	135	first strand
Strand 2	I	145	150	anti-parallel
Strand 3	I	181	190	anti-parallel
Strand 4	I	172	176	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	76	78	anti-parallel
Strand 4	J	64	66	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	108	113	parallel
Strand 3	J	87	94	anti-parallel
Strand 4	J	31	37	anti-parallel
Strand 5	J	43	51	anti-parallel
Strand 6	J	54	57	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	108	113	parallel
Strand 3	J	87	94	anti-parallel
Strand 4	J	103	104	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	127	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	187	196	anti-parallel
Strand 4	J	169	171	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	163	164	first strand
Strand 2	J	154	160	anti-parallel
Strand 3	J	206	213	anti-parallel
Strand 4	J	232	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SHI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SHI