Analysis of interatomic Contacts of Structural Units in PDB entry:
8SHR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SHR entry

There is 1 chain in PDB entry 8SHR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 220LEU 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8SHR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
222 225Right-handed 310
Helix 2
AA2
A
226 235Right-handed alpha
Helix 3
AA3
A
236 250Right-handed alpha
Helix 4
AA4
A
251 254Right-handed 310
Helix 5
AA5
A
267 276Right-handed alpha
Helix 6
AA6
A
288 300Right-handed alpha
Helix 7
AA7
A
340 351Right-handed alpha
Helix 8
AA8
A
372 380Right-handed alpha
Helix 9
AA9
A
381 385Right-handed 310
Helix 10
AB1
A
391 393Right-handed 310
Helix 11
AB2
A
394 399Right-handed alpha
Helix 12
AB3
A
408 412Right-handed 310
Helix 13
AB4
A
428 433Right-handed 310
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There are 4 sheets in PDB entry 8SHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 310first strand
Strand 2
A
280 285parallel
Strand 3
A
258 262parallel
Strand 4
A
323 327parallel
Strand 5
A
352 359parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
482 493anti-parallel
Strand 3
A
446 459anti-parallel
Strand 4
A
362 370anti-parallel
Strand 5
A
417 423anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
403 405first strand
Strand 2
A
482 493anti-parallel
Strand 3
A
446 459anti-parallel
Strand 4
A
467 470anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 441first strand
Strand 2
A
498 507anti-parallel
Strand 3
A
515 521anti-parallel
Strand 4
A
524 529anti-parallel
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