Analysis of interatomic Contacts of Structural Units in PDB entry:
8SHY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SHY entry

There is 1 chain in PDB entry 8SHY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 GLY 144LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8SHY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
145 185Right-handed alpha
Helix 2
AA2
C
248 250Right-handed 310
Helix 3
AA3
C
258 275Right-handed alpha
Helix 4
AA4
C
319 323Right-handed 310
Helix 5
AA5
C
333 342Right-handed alpha
Helix 6
AA6
C
367 377Right-handed alpha
Helix 7
AA7
C
393 412Right-handed alpha
Helix 8
AA8
C
413 416Right-handed 310
Helix 9
AA9
C
419 434Right-handed alpha
Helix 10
AB1
C
436 443Right-handed 310
Helix 11
AB2
C
444 463Right-handed alpha
Helix 12
AB3
C
482 499Right-handed alpha
Helix 13
AB4
C
501 506Right-handed alpha
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There are 4 sheets in PDB entry 8SHY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 195first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
303 314parallel
Strand 4
C
294 299anti-parallel
Strand 5
C
281 284anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 195first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
303 314parallel
Strand 4
C
345 349anti-parallel
Strand 5
C
363 366anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 227first strand
Strand 2
C
235 239anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
252 253first strand
Strand 2
C
256 257anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il