Analysis of interatomic Contacts of Structural Units in PDB entry:
8SI5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SI5 entry

There are 4 chains in PDB entry 8SI5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3SER 1230
B
 GLN 3SER 1230
C
 GLN 3SER 1230
D
 GLN 3SER 1230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are224 helices in PDB entry 8SI5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
34 39Right-handed alpha
Helix 3
AA3
A
47 52Right-handed alpha
Helix 4
AA4
A
71 76Right-handed alpha
Helix 5
AA5
A
116 126Right-handed alpha
Helix 6
AA6
A
149 157Right-handed alpha
Helix 7
AA7
A
158 166Right-handed alpha
Helix 8
AA8
A
180 190Right-handed alpha
Helix 9
AA9
A
191 193Right-handed 310
Helix 10
AB1
A
208 210Right-handed 310
Helix 11
AB2
A
259 272Right-handed alpha
Helix 12
AB3
A
293 305Right-handed alpha
Helix 13
AB4
A
320 332Right-handed alpha
Helix 14
AB5
A
342 354Right-handed alpha
Helix 15
AB6
A
358 372Right-handed alpha
Helix 16
AB7
A
390 398Right-handed alpha
Helix 17
AB8
A
406 418Right-handed alpha
Helix 18
AB9
A
419 427Right-handed alpha
Helix 19
AC1
A
437 449Right-handed alpha
Helix 20
AC2
A
451 461Right-handed alpha
Helix 21
AC3
A
464 469Right-handed alpha
Helix 22
AC4
A
470 479Right-handed alpha
Helix 23
AC5
A
487 497Right-handed alpha
Helix 24
AC6
A
508 521Right-handed alpha
Helix 25
AC7
A
526 529Right-handed 310
Helix 26
AC8
A
530 538Right-handed alpha
Helix 27
AC9
A
620 632Right-handed alpha
Helix 28
AD1
A
634 643Right-handed alpha
Helix 29
AD2
A
647 668Right-handed alpha
Helix 30
AD3
A
674 701Right-handed alpha
Helix 31
AD4
A
701 711Right-handed alpha
Helix 32
AD5
A
713 717Right-handed 310
Helix 33
AD6
A
720 728Right-handed alpha
Helix 34
AD7
A
730 735Right-handed alpha
Helix 35
AD8
A
736 749Right-handed alpha
Helix 36
AD9
A
756 767Right-handed alpha
Helix 37
AE1
A
768 774Right-handed 310
Helix 38
AE2
A
840 850Right-handed alpha
Helix 39
AE3
A
851 876Right-handed alpha
Helix 40
AE4
A
883 906Right-handed alpha
Helix 41
AE5
A
911 920Right-handed alpha
Helix 42
AE6
A
922 944Right-handed alpha
Helix 43
AE7
A
955 975Right-handed alpha
Helix 44
AE8
A
975 981Right-handed alpha
Helix 45
AE9
A
985 1000Right-handed alpha
Helix 46
AF1
A
1000 1023Right-handed alpha
Helix 47
AF2
A
1030 1044Right-handed alpha
Helix 48
AF3
A
1049 1053Right-handed 310
Helix 49
AF4
A
1062 1066Right-handed 310
Helix 50
AF5
A
1069 1071Right-handed 310
Helix 51
AF6
A
1072 1086Right-handed alpha
Helix 52
AF7
A
1086 1106Right-handed alpha
Helix 53
AF8
A
1106 1125Right-handed alpha
Helix 54
AF9
A
1132 1146Right-handed alpha
Helix 55
AG1
A
1163 1192Right-handed alpha
Helix 56
AG2
A
1192 1229Right-handed alpha
Helix 57
AG3
B
5 11Right-handed alpha
Helix 58
AG4
B
34 39Right-handed alpha
Helix 59
AG5
B
47 52Right-handed alpha
Helix 60
AG6
B
71 76Right-handed alpha
Helix 61
AG7
B
116 126Right-handed alpha
Helix 62
AG8
B
149 157Right-handed alpha
Helix 63
AG9
B
158 166Right-handed alpha
Helix 64
AH1
B
180 190Right-handed alpha
Helix 65
AH2
B
191 193Right-handed 310
Helix 66
AH3
B
208 210Right-handed 310
Helix 67
AH4
B
259 272Right-handed alpha
Helix 68
AH5
B
293 305Right-handed alpha
Helix 69
AH6
B
320 332Right-handed alpha
Helix 70
AH7
B
342 354Right-handed alpha
Helix 71
AH8
B
358 372Right-handed alpha
Helix 72
AH9
B
390 398Right-handed alpha
Helix 73
AI1
B
406 418Right-handed alpha
Helix 74
AI2
B
419 427Right-handed alpha
Helix 75
AI3
B
437 449Right-handed alpha
Helix 76
AI4
B
451 461Right-handed alpha
Helix 77
AI5
B
464 469Right-handed alpha
Helix 78
AI6
B
470 479Right-handed alpha
Helix 79
AI7
B
487 497Right-handed alpha
Helix 80
AI8
B
508 521Right-handed alpha
Helix 81
AI9
B
526 529Right-handed 310
Helix 82
AJ1
B
530 538Right-handed alpha
Helix 83
AJ2
B
620 632Right-handed alpha
Helix 84
AJ3
B
634 643Right-handed alpha
Helix 85
AJ4
B
647 668Right-handed alpha
Helix 86
AJ5
B
674 701Right-handed alpha
Helix 87
AJ6
B
701 711Right-handed alpha
Helix 88
AJ7
B
713 717Right-handed 310
Helix 89
AJ8
B
720 728Right-handed alpha
Helix 90
AJ9
B
730 735Right-handed alpha
Helix 91
AK1
B
736 749Right-handed alpha
Helix 92
AK2
B
756 767Right-handed alpha
Helix 93
AK3
B
768 774Right-handed 310
Helix 94
AK4
B
840 850Right-handed alpha
Helix 95
AK5
B
851 876Right-handed alpha
Helix 96
AK6
B
883 906Right-handed alpha
Helix 97
AK7
B
911 920Right-handed alpha
Helix 98
AK8
B
922 944Right-handed alpha
Helix 99
AK9
B
955 975Right-handed alpha
Helix 100
AL1
B
975 981Right-handed alpha
Helix 101
AL2
B
985 1000Right-handed alpha
Helix 102
AL3
B
1000 1023Right-handed alpha
Helix 103
AL4
B
1030 1044Right-handed alpha
Helix 104
AL5
B
1049 1053Right-handed 310
Helix 105
AL6
B
1062 1066Right-handed 310
Helix 106
AL7
B
1069 1071Right-handed 310
Helix 107
AL8
B
1072 1086Right-handed alpha
Helix 108
AL9
B
1086 1106Right-handed alpha
Helix 109
AM1
B
1106 1125Right-handed alpha
Helix 110
AM2
B
1132 1146Right-handed alpha
Helix 111
AM3
B
1163 1192Right-handed alpha
Helix 112
AM4
B
1192 1229Right-handed alpha
Helix 113
AM5
C
5 11Right-handed alpha
Helix 114
AM6
C
34 39Right-handed alpha
Helix 115
AM7
C
47 52Right-handed alpha
Helix 116
AM8
C
71 76Right-handed alpha
Helix 117
AM9
C
116 126Right-handed alpha
Helix 118
AN1
C
149 157Right-handed alpha
Helix 119
AN2
C
158 166Right-handed alpha
Helix 120
AN3
C
180 190Right-handed alpha
Helix 121
AN4
C
191 193Right-handed 310
Helix 122
AN5
C
208 210Right-handed 310
Helix 123
AN6
C
259 272Right-handed alpha
Helix 124
AN7
C
293 305Right-handed alpha
Helix 125
AN8
C
320 332Right-handed alpha
Helix 126
AN9
C
342 354Right-handed alpha
Helix 127
AO1
C
358 372Right-handed alpha
Helix 128
AO2
C
390 398Right-handed alpha
Helix 129
AO3
C
406 418Right-handed alpha
Helix 130
AO4
C
419 427Right-handed alpha
Helix 131
AO5
C
437 449Right-handed alpha
Helix 132
AO6
C
451 461Right-handed alpha
Helix 133
AO7
C
464 469Right-handed alpha
Helix 134
AO8
C
470 479Right-handed alpha
Helix 135
AO9
C
487 497Right-handed alpha
Helix 136
AP1
C
508 521Right-handed alpha
Helix 137
AP2
C
526 529Right-handed 310
Helix 138
AP3
C
530 538Right-handed alpha
Helix 139
AP4
C
620 632Right-handed alpha
Helix 140
AP5
C
634 643Right-handed alpha
Helix 141
AP6
C
647 668Right-handed alpha
Helix 142
AP7
C
674 701Right-handed alpha
Helix 143
AP8
C
701 711Right-handed alpha
Helix 144
AP9
C
713 717Right-handed 310
Helix 145
AQ1
C
720 728Right-handed alpha
Helix 146
AQ2
C
730 735Right-handed alpha
Helix 147
AQ3
C
736 749Right-handed alpha
Helix 148
AQ4
C
756 767Right-handed alpha
Helix 149
AQ5
C
768 774Right-handed 310
Helix 150
AQ6
C
840 850Right-handed alpha
Helix 151
AQ7
C
851 876Right-handed alpha
Helix 152
AQ8
C
883 906Right-handed alpha
Helix 153
AQ9
C
911 920Right-handed alpha
Helix 154
AR1
C
922 944Right-handed alpha
Helix 155
AR2
C
955 975Right-handed alpha
Helix 156
AR3
C
975 981Right-handed alpha
Helix 157
AR4
C
985 1000Right-handed alpha
Helix 158
AR5
C
1000 1023Right-handed alpha
Helix 159
AR6
C
1030 1044Right-handed alpha
Helix 160
AR7
C
1049 1053Right-handed 310
Helix 161
AR8
C
1062 1066Right-handed 310
Helix 162
AR9
C
1069 1071Right-handed 310
Helix 163
AS1
C
1072 1086Right-handed alpha
Helix 164
AS2
C
1086 1106Right-handed alpha
Helix 165
AS3
C
1106 1125Right-handed alpha
Helix 166
AS4
C
1132 1146Right-handed alpha
Helix 167
AS5
C
1163 1192Right-handed alpha
Helix 168
AS6
C
1192 1229Right-handed alpha
Helix 169
AS7
D
5 11Right-handed alpha
Helix 170
AS8
D
34 39Right-handed alpha
Helix 171
AS9
D
47 52Right-handed alpha
Helix 172
AT1
D
71 76Right-handed alpha
Helix 173
AT2
D
116 126Right-handed alpha
Helix 174
AT3
D
149 157Right-handed alpha
Helix 175
AT4
D
158 166Right-handed alpha
Helix 176
AT5
D
180 190Right-handed alpha
Helix 177
AT6
D
191 193Right-handed 310
Helix 178
AT7
D
208 210Right-handed 310
Helix 179
AT8
D
259 272Right-handed alpha
Helix 180
AT9
D
293 305Right-handed alpha
Helix 181
AU1
D
320 332Right-handed alpha
Helix 182
AU2
D
342 354Right-handed alpha
Helix 183
AU3
D
358 372Right-handed alpha
Helix 184
AU4
D
390 398Right-handed alpha
Helix 185
AU5
D
406 418Right-handed alpha
Helix 186
AU6
D
419 427Right-handed alpha
Helix 187
AU7
D
437 449Right-handed alpha
Helix 188
AU8
D
451 461Right-handed alpha
Helix 189
AU9
D
464 469Right-handed alpha
Helix 190
AV1
D
470 479Right-handed alpha
Helix 191
AV2
D
487 497Right-handed alpha
Helix 192
AV3
D
508 521Right-handed alpha
Helix 193
AV4
D
526 529Right-handed 310
Helix 194
AV5
D
530 538Right-handed alpha
Helix 195
AV6
D
620 632Right-handed alpha
Helix 196
AV7
D
634 643Right-handed alpha
Helix 197
AV8
D
647 668Right-handed alpha
Helix 198
AV9
D
674 701Right-handed alpha
Helix 199
AW1
D
701 711Right-handed alpha
Helix 200
AW2
D
713 717Right-handed 310
Helix 201
AW3
D
720 728Right-handed alpha
Helix 202
AW4
D
730 735Right-handed alpha
Helix 203
AW5
D
736 749Right-handed alpha
Helix 204
AW6
D
756 767Right-handed alpha
Helix 205
AW7
D
768 774Right-handed 310
Helix 206
AW8
D
840 850Right-handed alpha
Helix 207
AW9
D
851 876Right-handed alpha
Helix 208
AX1
D
883 906Right-handed alpha
Helix 209
AX2
D
911 920Right-handed alpha
Helix 210
AX3
D
922 944Right-handed alpha
Helix 211
AX4
D
955 975Right-handed alpha
Helix 212
AX5
D
975 981Right-handed alpha
Helix 213
AX6
D
985 1000Right-handed alpha
Helix 214
AX7
D
1000 1023Right-handed alpha
Helix 215
AX8
D
1030 1044Right-handed alpha
Helix 216
AX9
D
1049 1053Right-handed 310
Helix 217
AY1
D
1062 1066Right-handed 310
Helix 218
AY2
D
1069 1071Right-handed 310
Helix 219
AY3
D
1072 1086Right-handed alpha
Helix 220
AY4
D
1086 1106Right-handed alpha
Helix 221
AY5
D
1106 1125Right-handed alpha
Helix 222
AY6
D
1132 1146Right-handed alpha
Helix 223
AY7
D
1163 1192Right-handed alpha
Helix 224
AY8
D
1192 1229Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8SI5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 16first strand
Strand 2
A
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
91 96parallel
Strand 3
A
105 112anti-parallel
Strand 4
A
244 249parallel
Strand 5
A
200 206parallel
Strand 6
A
170 173parallel
Strand 7
A
136 141parallel
Strand 8
A
285 290parallel
Strand 9
A
312 314parallel
Strand 10
A
378 380parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 16first strand
Strand 2
B
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
218 221first strand
Strand 2
B
91 96parallel
Strand 3
B
105 112anti-parallel
Strand 4
B
244 249parallel
Strand 5
B
200 206parallel
Strand 6
B
170 173parallel
Strand 7
B
136 141parallel
Strand 8
B
285 290parallel
Strand 9
B
312 314parallel
Strand 10
B
378 380parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 16first strand
Strand 2
C
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
91 96parallel
Strand 3
C
105 112anti-parallel
Strand 4
C
244 249parallel
Strand 5
C
200 206parallel
Strand 6
C
170 173parallel
Strand 7
C
136 141parallel
Strand 8
C
285 290parallel
Strand 9
C
312 314parallel
Strand 10
C
378 380parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 16first strand
Strand 2
D
84 87anti-parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
218 221first strand
Strand 2
D
91 96parallel
Strand 3
D
105 112anti-parallel
Strand 4
D
244 249parallel
Strand 5
D
200 206parallel
Strand 6
D
170 173parallel
Strand 7
D
136 141parallel
Strand 8
D
285 290parallel
Strand 9
D
312 314parallel
Strand 10
D
378 380parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il