Analysis of interatomic Contacts of Structural Units in PDB entry:
8SI6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SI6 entry

There are 4 chains in PDB entry 8SI6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	SER 1230
B	GLN 3	SER 1230
C	GLN 3	SER 1230
D	GLN 3	SER 1230

There are216 helices in PDB entry 8SI6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed alpha
Helix 2	AA2	A	31	39	Right-handed alpha
Helix 3	AA3	A	47	51	Right-handed 310
Helix 4	AA4	A	71	75	Right-handed 310
Helix 5	AA5	A	116	127	Right-handed alpha
Helix 6	AA6	A	149	166	Right-handed alpha
Helix 7	AA7	A	179	191	Right-handed alpha
Helix 8	AA8	A	194	198	Right-handed 310
Helix 9	AA9	A	213	217	Right-handed 310
Helix 10	AB1	A	258	272	Right-handed alpha
Helix 11	AB2	A	293	305	Right-handed alpha
Helix 12	AB3	A	320	331	Right-handed alpha
Helix 13	AB4	A	342	354	Right-handed alpha
Helix 14	AB5	A	360	372	Right-handed alpha
Helix 15	AB6	A	374	376	Right-handed 310
Helix 16	AB7	A	391	402	Right-handed alpha
Helix 17	AB8	A	406	418	Right-handed alpha
Helix 18	AB9	A	419	427	Right-handed alpha
Helix 19	AC1	A	437	449	Right-handed alpha
Helix 20	AC2	A	451	461	Right-handed alpha
Helix 21	AC3	A	464	469	Right-handed alpha
Helix 22	AC4	A	470	479	Right-handed alpha
Helix 23	AC5	A	488	495	Right-handed alpha
Helix 24	AC6	A	508	521	Right-handed alpha
Helix 25	AC7	A	530	540	Right-handed alpha
Helix 26	AC8	A	620	632	Right-handed alpha
Helix 27	AC9	A	634	644	Right-handed alpha
Helix 28	AD1	A	647	668	Right-handed alpha
Helix 29	AD2	A	675	701	Right-handed alpha
Helix 30	AD3	A	701	709	Right-handed alpha
Helix 31	AD4	A	720	729	Right-handed alpha
Helix 32	AD5	A	730	735	Right-handed alpha
Helix 33	AD6	A	736	749	Right-handed alpha
Helix 34	AD7	A	757	767	Right-handed alpha
Helix 35	AD8	A	768	774	Right-handed 310
Helix 36	AD9	A	778	782	Right-handed 310
Helix 37	AE1	A	788	797	Right-handed alpha
Helix 38	AE2	A	840	850	Right-handed alpha
Helix 39	AE3	A	851	876	Right-handed alpha
Helix 40	AE4	A	883	906	Right-handed alpha
Helix 41	AE5	A	911	920	Right-handed alpha
Helix 42	AE6	A	922	944	Right-handed alpha
Helix 43	AE7	A	955	981	Right-handed alpha
Helix 44	AE8	A	985	1000	Right-handed alpha
Helix 45	AE9	A	1000	1023	Right-handed alpha
Helix 46	AF1	A	1030	1036	Right-handed alpha
Helix 47	AF2	A	1037	1043	Right-handed alpha
Helix 48	AF3	A	1069	1071	Right-handed 310
Helix 49	AF4	A	1072	1085	Right-handed alpha
Helix 50	AF5	A	1087	1114	Right-handed alpha
Helix 51	AF6	A	1114	1120	Right-handed alpha
Helix 52	AF7	A	1133	1147	Right-handed alpha
Helix 53	AF8	A	1163	1191	Right-handed alpha
Helix 54	AF9	A	1192	1230	Right-handed alpha
Helix 55	AG1	B	5	11	Right-handed alpha
Helix 56	AG2	B	31	39	Right-handed alpha
Helix 57	AG3	B	47	51	Right-handed 310
Helix 58	AG4	B	71	75	Right-handed 310
Helix 59	AG5	B	116	127	Right-handed alpha
Helix 60	AG6	B	149	166	Right-handed alpha
Helix 61	AG7	B	179	191	Right-handed alpha
Helix 62	AG8	B	194	198	Right-handed 310
Helix 63	AG9	B	213	217	Right-handed 310
Helix 64	AH1	B	258	272	Right-handed alpha
Helix 65	AH2	B	293	305	Right-handed alpha
Helix 66	AH3	B	320	331	Right-handed alpha
Helix 67	AH4	B	342	354	Right-handed alpha
Helix 68	AH5	B	360	372	Right-handed alpha
Helix 69	AH6	B	374	376	Right-handed 310
Helix 70	AH7	B	391	402	Right-handed alpha
Helix 71	AH8	B	406	418	Right-handed alpha
Helix 72	AH9	B	419	427	Right-handed alpha
Helix 73	AI1	B	437	449	Right-handed alpha
Helix 74	AI2	B	451	461	Right-handed alpha
Helix 75	AI3	B	464	469	Right-handed alpha
Helix 76	AI4	B	470	479	Right-handed alpha
Helix 77	AI5	B	488	495	Right-handed alpha
Helix 78	AI6	B	508	521	Right-handed alpha
Helix 79	AI7	B	530	540	Right-handed alpha
Helix 80	AI8	B	620	632	Right-handed alpha
Helix 81	AI9	B	634	644	Right-handed alpha
Helix 82	AJ1	B	647	668	Right-handed alpha
Helix 83	AJ2	B	675	701	Right-handed alpha
Helix 84	AJ3	B	701	709	Right-handed alpha
Helix 85	AJ4	B	720	729	Right-handed alpha
Helix 86	AJ5	B	730	735	Right-handed alpha
Helix 87	AJ6	B	736	749	Right-handed alpha
Helix 88	AJ7	B	757	767	Right-handed alpha
Helix 89	AJ8	B	768	774	Right-handed 310
Helix 90	AJ9	B	778	782	Right-handed 310
Helix 91	AK1	B	788	797	Right-handed alpha
Helix 92	AK2	B	840	850	Right-handed alpha
Helix 93	AK3	B	851	876	Right-handed alpha
Helix 94	AK4	B	883	906	Right-handed alpha
Helix 95	AK5	B	911	920	Right-handed alpha
Helix 96	AK6	B	922	944	Right-handed alpha
Helix 97	AK7	B	955	981	Right-handed alpha
Helix 98	AK8	B	985	1000	Right-handed alpha
Helix 99	AK9	B	1000	1023	Right-handed alpha
Helix 100	AL1	B	1030	1036	Right-handed alpha
Helix 101	AL2	B	1037	1043	Right-handed alpha
Helix 102	AL3	B	1069	1071	Right-handed 310
Helix 103	AL4	B	1072	1085	Right-handed alpha
Helix 104	AL5	B	1087	1114	Right-handed alpha
Helix 105	AL6	B	1114	1120	Right-handed alpha
Helix 106	AL7	B	1133	1147	Right-handed alpha
Helix 107	AL8	B	1163	1191	Right-handed alpha
Helix 108	AL9	B	1192	1230	Right-handed alpha
Helix 109	AM1	C	5	11	Right-handed alpha
Helix 110	AM2	C	31	39	Right-handed alpha
Helix 111	AM3	C	47	51	Right-handed 310
Helix 112	AM4	C	71	75	Right-handed 310
Helix 113	AM5	C	116	127	Right-handed alpha
Helix 114	AM6	C	149	166	Right-handed alpha
Helix 115	AM7	C	179	191	Right-handed alpha
Helix 116	AM8	C	194	198	Right-handed 310
Helix 117	AM9	C	213	217	Right-handed 310
Helix 118	AN1	C	258	272	Right-handed alpha
Helix 119	AN2	C	293	305	Right-handed alpha
Helix 120	AN3	C	320	331	Right-handed alpha
Helix 121	AN4	C	342	354	Right-handed alpha
Helix 122	AN5	C	360	372	Right-handed alpha
Helix 123	AN6	C	374	376	Right-handed 310
Helix 124	AN7	C	391	402	Right-handed alpha
Helix 125	AN8	C	406	418	Right-handed alpha
Helix 126	AN9	C	419	427	Right-handed alpha
Helix 127	AO1	C	437	449	Right-handed alpha
Helix 128	AO2	C	451	461	Right-handed alpha
Helix 129	AO3	C	464	469	Right-handed alpha
Helix 130	AO4	C	470	479	Right-handed alpha
Helix 131	AO5	C	488	495	Right-handed alpha
Helix 132	AO6	C	508	521	Right-handed alpha
Helix 133	AO7	C	530	540	Right-handed alpha
Helix 134	AO8	C	620	632	Right-handed alpha
Helix 135	AO9	C	634	644	Right-handed alpha
Helix 136	AP1	C	647	668	Right-handed alpha
Helix 137	AP2	C	675	701	Right-handed alpha
Helix 138	AP3	C	701	709	Right-handed alpha
Helix 139	AP4	C	720	729	Right-handed alpha
Helix 140	AP5	C	730	735	Right-handed alpha
Helix 141	AP6	C	736	749	Right-handed alpha
Helix 142	AP7	C	757	767	Right-handed alpha
Helix 143	AP8	C	768	774	Right-handed 310
Helix 144	AP9	C	778	782	Right-handed 310
Helix 145	AQ1	C	788	797	Right-handed alpha
Helix 146	AQ2	C	840	850	Right-handed alpha
Helix 147	AQ3	C	851	876	Right-handed alpha
Helix 148	AQ4	C	883	906	Right-handed alpha
Helix 149	AQ5	C	911	920	Right-handed alpha
Helix 150	AQ6	C	922	944	Right-handed alpha
Helix 151	AQ7	C	955	981	Right-handed alpha
Helix 152	AQ8	C	985	1000	Right-handed alpha
Helix 153	AQ9	C	1000	1023	Right-handed alpha
Helix 154	AR1	C	1030	1036	Right-handed alpha
Helix 155	AR2	C	1037	1043	Right-handed alpha
Helix 156	AR3	C	1069	1071	Right-handed 310
Helix 157	AR4	C	1072	1085	Right-handed alpha
Helix 158	AR5	C	1087	1114	Right-handed alpha
Helix 159	AR6	C	1114	1120	Right-handed alpha
Helix 160	AR7	C	1133	1147	Right-handed alpha
Helix 161	AR8	C	1163	1191	Right-handed alpha
Helix 162	AR9	C	1192	1230	Right-handed alpha
Helix 163	AS1	D	5	11	Right-handed alpha
Helix 164	AS2	D	31	39	Right-handed alpha
Helix 165	AS3	D	47	51	Right-handed 310
Helix 166	AS4	D	71	75	Right-handed 310
Helix 167	AS5	D	116	127	Right-handed alpha
Helix 168	AS6	D	149	166	Right-handed alpha
Helix 169	AS7	D	179	191	Right-handed alpha
Helix 170	AS8	D	194	198	Right-handed 310
Helix 171	AS9	D	213	217	Right-handed 310
Helix 172	AT1	D	258	272	Right-handed alpha
Helix 173	AT2	D	293	305	Right-handed alpha
Helix 174	AT3	D	320	331	Right-handed alpha
Helix 175	AT4	D	342	354	Right-handed alpha
Helix 176	AT5	D	360	372	Right-handed alpha
Helix 177	AT6	D	374	376	Right-handed 310
Helix 178	AT7	D	390	402	Right-handed alpha
Helix 179	AT8	D	406	418	Right-handed alpha
Helix 180	AT9	D	419	427	Right-handed alpha
Helix 181	AU1	D	437	449	Right-handed alpha
Helix 182	AU2	D	451	461	Right-handed alpha
Helix 183	AU3	D	464	469	Right-handed alpha
Helix 184	AU4	D	470	479	Right-handed alpha
Helix 185	AU5	D	488	495	Right-handed alpha
Helix 186	AU6	D	508	521	Right-handed alpha
Helix 187	AU7	D	530	540	Right-handed alpha
Helix 188	AU8	D	620	632	Right-handed alpha
Helix 189	AU9	D	634	644	Right-handed alpha
Helix 190	AV1	D	647	668	Right-handed alpha
Helix 191	AV2	D	675	701	Right-handed alpha
Helix 192	AV3	D	701	709	Right-handed alpha
Helix 193	AV4	D	720	729	Right-handed alpha
Helix 194	AV5	D	730	735	Right-handed alpha
Helix 195	AV6	D	736	749	Right-handed alpha
Helix 196	AV7	D	757	767	Right-handed alpha
Helix 197	AV8	D	768	774	Right-handed 310
Helix 198	AV9	D	778	782	Right-handed 310
Helix 199	AW1	D	788	797	Right-handed alpha
Helix 200	AW2	D	840	850	Right-handed alpha
Helix 201	AW3	D	851	876	Right-handed alpha
Helix 202	AW4	D	883	906	Right-handed alpha
Helix 203	AW5	D	911	920	Right-handed alpha
Helix 204	AW6	D	922	944	Right-handed alpha
Helix 205	AW7	D	955	981	Right-handed alpha
Helix 206	AW8	D	985	1000	Right-handed alpha
Helix 207	AW9	D	1000	1023	Right-handed alpha
Helix 208	AX1	D	1030	1036	Right-handed alpha
Helix 209	AX2	D	1037	1043	Right-handed alpha
Helix 210	AX3	D	1069	1071	Right-handed 310
Helix 211	AX4	D	1072	1085	Right-handed alpha
Helix 212	AX5	D	1087	1114	Right-handed alpha
Helix 213	AX6	D	1114	1120	Right-handed alpha
Helix 214	AX7	D	1133	1147	Right-handed alpha
Helix 215	AX8	D	1163	1191	Right-handed alpha
Helix 216	AX9	D	1192	1230	Right-handed alpha

There are 12 sheets in PDB entry 8SI6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	85	87	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	91	94	parallel
Strand 3	A	107	108	anti-parallel
Strand 4	A	244	248	parallel
Strand 5	A	200	206	parallel
Strand 6	A	170	173	parallel
Strand 7	A	136	140	parallel
Strand 8	A	285	289	parallel
Strand 9	A	312	315	parallel
Strand 10	A	378	381	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	279	282	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	85	87	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	91	94	parallel
Strand 3	B	107	108	anti-parallel
Strand 4	B	244	248	parallel
Strand 5	B	200	206	parallel
Strand 6	B	170	173	parallel
Strand 7	B	136	140	parallel
Strand 8	B	285	289	parallel
Strand 9	B	312	315	parallel
Strand 10	B	378	381	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	279	282	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	85	87	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	219	first strand
Strand 2	C	91	94	parallel
Strand 3	C	107	108	anti-parallel
Strand 4	C	244	248	parallel
Strand 5	C	200	206	parallel
Strand 6	C	170	173	parallel
Strand 7	C	136	140	parallel
Strand 8	C	285	289	parallel
Strand 9	C	312	315	parallel
Strand 10	C	378	381	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	279	282	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	15	first strand
Strand 2	D	85	87	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	219	first strand
Strand 2	D	91	94	parallel
Strand 3	D	107	108	anti-parallel
Strand 4	D	244	248	parallel
Strand 5	D	200	206	parallel
Strand 6	D	170	173	parallel
Strand 7	D	136	140	parallel
Strand 8	D	285	289	parallel
Strand 9	D	312	315	parallel
Strand 10	D	378	381	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	276	first strand
Strand 2	D	279	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SI6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SI6