Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SIA entry

There are 4 chains in PDB entry 8SIA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	SER 1230
B	GLN 3	SER 1230
C	GLN 3	SER 1230
D	GLN 3	SER 1230

There are224 helices in PDB entry 8SIA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed alpha
Helix 2	AA2	A	32	40	Right-handed alpha
Helix 3	AA3	A	54	59	Right-handed alpha
Helix 4	AA4	A	116	125	Right-handed alpha
Helix 5	AA5	A	149	166	Right-handed alpha
Helix 6	AA6	A	179	191	Right-handed alpha
Helix 7	AA7	A	212	217	Right-handed alpha
Helix 8	AA8	A	258	268	Right-handed alpha
Helix 9	AA9	A	293	306	Right-handed alpha
Helix 10	AB1	A	319	328	Right-handed alpha
Helix 11	AB2	A	329	331	Right-handed 310
Helix 12	AB3	A	342	354	Right-handed alpha
Helix 13	AB4	A	358	361	Right-handed 310
Helix 14	AB5	A	362	374	Right-handed alpha
Helix 15	AB6	A	390	401	Right-handed alpha
Helix 16	AB7	A	406	418	Right-handed alpha
Helix 17	AB8	A	419	427	Right-handed alpha
Helix 18	AB9	A	435	449	Right-handed alpha
Helix 19	AC1	A	451	460	Right-handed alpha
Helix 20	AC2	A	470	479	Right-handed alpha
Helix 21	AC3	A	486	497	Right-handed alpha
Helix 22	AC4	A	508	520	Right-handed alpha
Helix 23	AC5	A	530	540	Right-handed alpha
Helix 24	AC6	A	621	630	Right-handed alpha
Helix 25	AC7	A	634	644	Right-handed alpha
Helix 26	AC8	A	647	669	Right-handed alpha
Helix 27	AC9	A	675	687	Right-handed alpha
Helix 28	AD1	A	690	699	Right-handed alpha
Helix 29	AD2	A	703	708	Right-handed alpha
Helix 30	AD3	A	722	728	Right-handed alpha
Helix 31	AD4	A	730	735	Right-handed alpha
Helix 32	AD5	A	737	749	Right-handed alpha
Helix 33	AD6	A	757	767	Right-handed alpha
Helix 34	AD7	A	768	774	Right-handed 310
Helix 35	AD8	A	788	797	Right-handed alpha
Helix 36	AD9	A	841	850	Right-handed alpha
Helix 37	AE1	A	851	858	Right-handed alpha
Helix 38	AE2	A	859	876	Right-handed alpha
Helix 39	AE3	A	883	906	Right-handed alpha
Helix 40	AE4	A	911	920	Right-handed alpha
Helix 41	AE5	A	922	944	Right-handed alpha
Helix 42	AE6	A	955	980	Right-handed alpha
Helix 43	AE7	A	981	983	Right-handed 310
Helix 44	AE8	A	986	991	Right-handed alpha
Helix 45	AE9	A	991	1000	Right-handed alpha
Helix 46	AF1	A	1000	1023	Right-handed alpha
Helix 47	AF2	A	1030	1035	Right-handed alpha
Helix 48	AF3	A	1038	1043	Right-handed alpha
Helix 49	AF4	A	1044	1046	Right-handed 310
Helix 50	AF5	A	1069	1071	Right-handed 310
Helix 51	AF6	A	1072	1085	Right-handed alpha
Helix 52	AF7	A	1088	1099	Right-handed alpha
Helix 53	AF8	A	1099	1123	Right-handed alpha
Helix 54	AF9	A	1134	1147	Right-handed alpha
Helix 55	AG1	A	1164	1191	Right-handed alpha
Helix 56	AG2	A	1193	1230	Right-handed alpha
Helix 57	AG3	B	5	11	Right-handed alpha
Helix 58	AG4	B	32	40	Right-handed alpha
Helix 59	AG5	B	54	59	Right-handed alpha
Helix 60	AG6	B	116	125	Right-handed alpha
Helix 61	AG7	B	149	166	Right-handed alpha
Helix 62	AG8	B	179	191	Right-handed alpha
Helix 63	AG9	B	212	217	Right-handed alpha
Helix 64	AH1	B	258	268	Right-handed alpha
Helix 65	AH2	B	293	306	Right-handed alpha
Helix 66	AH3	B	319	328	Right-handed alpha
Helix 67	AH4	B	329	331	Right-handed 310
Helix 68	AH5	B	342	354	Right-handed alpha
Helix 69	AH6	B	358	361	Right-handed 310
Helix 70	AH7	B	362	374	Right-handed alpha
Helix 71	AH8	B	390	401	Right-handed alpha
Helix 72	AH9	B	406	418	Right-handed alpha
Helix 73	AI1	B	419	427	Right-handed alpha
Helix 74	AI2	B	435	449	Right-handed alpha
Helix 75	AI3	B	451	460	Right-handed alpha
Helix 76	AI4	B	470	479	Right-handed alpha
Helix 77	AI5	B	486	497	Right-handed alpha
Helix 78	AI6	B	508	520	Right-handed alpha
Helix 79	AI7	B	530	540	Right-handed alpha
Helix 80	AI8	B	621	630	Right-handed alpha
Helix 81	AI9	B	634	644	Right-handed alpha
Helix 82	AJ1	B	647	669	Right-handed alpha
Helix 83	AJ2	B	675	687	Right-handed alpha
Helix 84	AJ3	B	690	699	Right-handed alpha
Helix 85	AJ4	B	703	708	Right-handed alpha
Helix 86	AJ5	B	722	728	Right-handed alpha
Helix 87	AJ6	B	730	735	Right-handed alpha
Helix 88	AJ7	B	737	749	Right-handed alpha
Helix 89	AJ8	B	757	767	Right-handed alpha
Helix 90	AJ9	B	768	774	Right-handed 310
Helix 91	AK1	B	788	797	Right-handed alpha
Helix 92	AK2	B	841	850	Right-handed alpha
Helix 93	AK3	B	851	858	Right-handed alpha
Helix 94	AK4	B	859	876	Right-handed alpha
Helix 95	AK5	B	883	906	Right-handed alpha
Helix 96	AK6	B	911	920	Right-handed alpha
Helix 97	AK7	B	922	944	Right-handed alpha
Helix 98	AK8	B	955	980	Right-handed alpha
Helix 99	AK9	B	981	983	Right-handed 310
Helix 100	AL1	B	986	991	Right-handed alpha
Helix 101	AL2	B	991	1000	Right-handed alpha
Helix 102	AL3	B	1000	1023	Right-handed alpha
Helix 103	AL4	B	1030	1035	Right-handed alpha
Helix 104	AL5	B	1038	1043	Right-handed alpha
Helix 105	AL6	B	1044	1046	Right-handed 310
Helix 106	AL7	B	1069	1071	Right-handed 310
Helix 107	AL8	B	1072	1085	Right-handed alpha
Helix 108	AL9	B	1088	1099	Right-handed alpha
Helix 109	AM1	B	1099	1123	Right-handed alpha
Helix 110	AM2	B	1134	1147	Right-handed alpha
Helix 111	AM3	B	1164	1191	Right-handed alpha
Helix 112	AM4	B	1193	1230	Right-handed alpha
Helix 113	AM5	C	5	11	Right-handed alpha
Helix 114	AM6	C	32	40	Right-handed alpha
Helix 115	AM7	C	54	59	Right-handed alpha
Helix 116	AM8	C	116	125	Right-handed alpha
Helix 117	AM9	C	149	166	Right-handed alpha
Helix 118	AN1	C	179	191	Right-handed alpha
Helix 119	AN2	C	212	217	Right-handed alpha
Helix 120	AN3	C	258	268	Right-handed alpha
Helix 121	AN4	C	293	306	Right-handed alpha
Helix 122	AN5	C	319	328	Right-handed alpha
Helix 123	AN6	C	329	331	Right-handed 310
Helix 124	AN7	C	342	354	Right-handed alpha
Helix 125	AN8	C	358	361	Right-handed 310
Helix 126	AN9	C	362	374	Right-handed alpha
Helix 127	AO1	C	390	401	Right-handed alpha
Helix 128	AO2	C	406	418	Right-handed alpha
Helix 129	AO3	C	419	427	Right-handed alpha
Helix 130	AO4	C	435	449	Right-handed alpha
Helix 131	AO5	C	451	460	Right-handed alpha
Helix 132	AO6	C	470	479	Right-handed alpha
Helix 133	AO7	C	486	497	Right-handed alpha
Helix 134	AO8	C	508	520	Right-handed alpha
Helix 135	AO9	C	530	540	Right-handed alpha
Helix 136	AP1	C	621	630	Right-handed alpha
Helix 137	AP2	C	634	644	Right-handed alpha
Helix 138	AP3	C	647	669	Right-handed alpha
Helix 139	AP4	C	675	687	Right-handed alpha
Helix 140	AP5	C	690	699	Right-handed alpha
Helix 141	AP6	C	703	708	Right-handed alpha
Helix 142	AP7	C	722	728	Right-handed alpha
Helix 143	AP8	C	730	735	Right-handed alpha
Helix 144	AP9	C	737	749	Right-handed alpha
Helix 145	AQ1	C	757	767	Right-handed alpha
Helix 146	AQ2	C	768	774	Right-handed 310
Helix 147	AQ3	C	788	797	Right-handed alpha
Helix 148	AQ4	C	841	850	Right-handed alpha
Helix 149	AQ5	C	851	858	Right-handed alpha
Helix 150	AQ6	C	859	876	Right-handed alpha
Helix 151	AQ7	C	883	906	Right-handed alpha
Helix 152	AQ8	C	911	920	Right-handed alpha
Helix 153	AQ9	C	922	944	Right-handed alpha
Helix 154	AR1	C	955	980	Right-handed alpha
Helix 155	AR2	C	981	983	Right-handed 310
Helix 156	AR3	C	986	991	Right-handed alpha
Helix 157	AR4	C	991	1000	Right-handed alpha
Helix 158	AR5	C	1000	1023	Right-handed alpha
Helix 159	AR6	C	1030	1035	Right-handed alpha
Helix 160	AR7	C	1038	1043	Right-handed alpha
Helix 161	AR8	C	1044	1046	Right-handed 310
Helix 162	AR9	C	1069	1071	Right-handed 310
Helix 163	AS1	C	1072	1085	Right-handed alpha
Helix 164	AS2	C	1088	1099	Right-handed alpha
Helix 165	AS3	C	1099	1123	Right-handed alpha
Helix 166	AS4	C	1134	1147	Right-handed alpha
Helix 167	AS5	C	1164	1191	Right-handed alpha
Helix 168	AS6	C	1193	1230	Right-handed alpha
Helix 169	AS7	D	5	11	Right-handed alpha
Helix 170	AS8	D	32	40	Right-handed alpha
Helix 171	AS9	D	54	59	Right-handed alpha
Helix 172	AT1	D	116	125	Right-handed alpha
Helix 173	AT2	D	149	166	Right-handed alpha
Helix 174	AT3	D	179	191	Right-handed alpha
Helix 175	AT4	D	212	217	Right-handed alpha
Helix 176	AT5	D	258	268	Right-handed alpha
Helix 177	AT6	D	293	306	Right-handed alpha
Helix 178	AT7	D	319	328	Right-handed alpha
Helix 179	AT8	D	329	331	Right-handed 310
Helix 180	AT9	D	342	354	Right-handed alpha
Helix 181	AU1	D	358	361	Right-handed 310
Helix 182	AU2	D	362	374	Right-handed alpha
Helix 183	AU3	D	390	401	Right-handed alpha
Helix 184	AU4	D	406	418	Right-handed alpha
Helix 185	AU5	D	419	427	Right-handed alpha
Helix 186	AU6	D	435	449	Right-handed alpha
Helix 187	AU7	D	451	460	Right-handed alpha
Helix 188	AU8	D	470	479	Right-handed alpha
Helix 189	AU9	D	486	497	Right-handed alpha
Helix 190	AV1	D	508	520	Right-handed alpha
Helix 191	AV2	D	530	540	Right-handed alpha
Helix 192	AV3	D	621	630	Right-handed alpha
Helix 193	AV4	D	634	644	Right-handed alpha
Helix 194	AV5	D	647	669	Right-handed alpha
Helix 195	AV6	D	675	687	Right-handed alpha
Helix 196	AV7	D	690	699	Right-handed alpha
Helix 197	AV8	D	703	708	Right-handed alpha
Helix 198	AV9	D	722	728	Right-handed alpha
Helix 199	AW1	D	730	735	Right-handed alpha
Helix 200	AW2	D	737	749	Right-handed alpha
Helix 201	AW3	D	757	767	Right-handed alpha
Helix 202	AW4	D	768	774	Right-handed 310
Helix 203	AW5	D	788	797	Right-handed alpha
Helix 204	AW6	D	841	850	Right-handed alpha
Helix 205	AW7	D	851	858	Right-handed alpha
Helix 206	AW8	D	859	876	Right-handed alpha
Helix 207	AW9	D	883	906	Right-handed alpha
Helix 208	AX1	D	911	920	Right-handed alpha
Helix 209	AX2	D	922	944	Right-handed alpha
Helix 210	AX3	D	955	980	Right-handed alpha
Helix 211	AX4	D	981	983	Right-handed 310
Helix 212	AX5	D	986	991	Right-handed alpha
Helix 213	AX6	D	991	1000	Right-handed alpha
Helix 214	AX7	D	1000	1023	Right-handed alpha
Helix 215	AX8	D	1030	1035	Right-handed alpha
Helix 216	AX9	D	1038	1043	Right-handed alpha
Helix 217	AY1	D	1044	1046	Right-handed 310
Helix 218	AY2	D	1069	1071	Right-handed 310
Helix 219	AY3	D	1072	1085	Right-handed alpha
Helix 220	AY4	D	1088	1099	Right-handed alpha
Helix 221	AY5	D	1099	1123	Right-handed alpha
Helix 222	AY6	D	1134	1147	Right-handed alpha
Helix 223	AY7	D	1164	1191	Right-handed alpha
Helix 224	AY8	D	1193	1230	Right-handed alpha

There are 20 sheets in PDB entry 8SIA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	84	88	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	92	95	anti-parallel
Strand 3	A	219	221	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	139	first strand
Strand 2	A	286	289	parallel
Strand 3	A	313	314	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	202	206	parallel
Strand 3	A	245	248	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	276	first strand
Strand 2	A	279	282	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	84	88	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	107	first strand
Strand 2	B	92	95	anti-parallel
Strand 3	B	219	221	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	137	139	first strand
Strand 2	B	286	289	parallel
Strand 3	B	313	314	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	202	206	parallel
Strand 3	B	245	248	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	276	first strand
Strand 2	B	279	282	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	84	88	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	106	107	first strand
Strand 2	C	92	95	anti-parallel
Strand 3	C	219	221	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	139	first strand
Strand 2	C	286	289	parallel
Strand 3	C	313	314	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	202	206	parallel
Strand 3	C	245	248	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	276	first strand
Strand 2	C	279	282	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	84	88	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	106	107	first strand
Strand 2	D	92	95	anti-parallel
Strand 3	D	219	221	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	137	139	first strand
Strand 2	D	286	289	parallel
Strand 3	D	313	314	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	202	206	parallel
Strand 3	D	245	248	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	276	first strand
Strand 2	D	279	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SIA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIA