Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SIB entry

There is 1 chain in PDB entry 8SIB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8SIB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 11Right-handed alpha
Helix 2
AA2
A
116 125Right-handed alpha
Helix 3
AA3
A
149 167Right-handed alpha
Helix 4
AA4
A
179 191Right-handed alpha
Helix 5
AA5
A
212 216Right-handed 310
Helix 6
AA6
A
258 273Right-handed alpha
Helix 7
AA7
A
295 305Right-handed alpha
Helix 8
AA8
A
321 331Right-handed alpha
Helix 9
AA9
A
342 354Right-handed alpha
Helix 10
AB1
A
359 372Right-handed alpha
Helix 11
AB2
A
373 375Right-handed 310
Helix 12
AB3
A
390 398Right-handed alpha
Helix 13
AB4
A
406 418Right-handed alpha
Helix 14
AB5
A
419 426Right-handed alpha
Helix 15
AB6
A
437 449Right-handed alpha
Helix 16
AB7
A
451 460Right-handed alpha
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There are 2 sheets in PDB entry 8SIB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
84 88anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
244 249parallel
Strand 4
A
200 206parallel
Strand 5
A
169 173parallel
Strand 6
A
135 140parallel
Strand 7
A
285 289parallel
Strand 8
A
312 315parallel
Strand 9
A
378 381parallel
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