Analysis of interatomic Contacts of Structural Units in PDB entry:
8SID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SID entry

There are 9 chains in PDB entry 8SID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 7	VAL 340
B	ASP 10	ARG 347
C	SER 7	VAL 340
D	ASP 10	ARG 347
E	GLY 25	LEU 357
I	ASN 1	LEU 105
J	VAL 2	SER 117
L	ASN 1	LYS 106
K	VAL 2	THR 118

There are 47 helices in PDB entry 8SID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	21	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	218	226	Right-handed alpha
Helix 4	AA4	A	226	238	Right-handed alpha
Helix 5	AA5	A	239	241	Right-handed 310
Helix 6	AA6	A	246	271	Right-handed alpha
Helix 7	AA7	A	279	306	Right-handed alpha
Helix 8	AA8	A	309	340	Right-handed alpha
Helix 9	AA9	B	11	23	Right-handed alpha
Helix 10	AB1	B	72	76	Right-handed 310
Helix 11	AB2	B	89	93	Right-handed 310
Helix 12	AB3	B	174	177	Right-handed 310
Helix 13	AB4	B	223	230	Right-handed alpha
Helix 14	AB5	B	230	243	Right-handed alpha
Helix 15	AB6	B	244	247	Right-handed 310
Helix 16	AB7	B	251	276	Right-handed alpha
Helix 17	AB8	B	284	311	Right-handed alpha
Helix 18	AB9	B	314	346	Right-handed alpha
Helix 19	AC1	C	8	21	Right-handed alpha
Helix 20	AC2	C	70	73	Right-handed 310
Helix 21	AC3	C	86	90	Right-handed 310
Helix 22	AC4	C	218	225	Right-handed alpha
Helix 23	AC5	C	225	238	Right-handed alpha
Helix 24	AC6	C	239	241	Right-handed 310
Helix 25	AC7	C	247	270	Right-handed alpha
Helix 26	AC8	C	279	305	Right-handed alpha
Helix 27	AC9	C	309	339	Right-handed alpha
Helix 28	AD1	D	11	24	Right-handed alpha
Helix 29	AD2	D	72	76	Right-handed 310
Helix 30	AD3	D	89	93	Right-handed 310
Helix 31	AD4	D	174	177	Right-handed 310
Helix 32	AD5	D	223	230	Right-handed alpha
Helix 33	AD6	D	230	243	Right-handed alpha
Helix 34	AD7	D	244	246	Right-handed 310
Helix 35	AD8	D	251	276	Right-handed alpha
Helix 36	AD9	D	284	311	Right-handed alpha
Helix 37	AE1	D	314	346	Right-handed alpha
Helix 38	AE2	E	26	35	Right-handed alpha
Helix 39	AE3	E	102	106	Right-handed 310
Helix 40	AE4	E	234	240	Right-handed alpha
Helix 41	AE5	E	240	253	Right-handed alpha
Helix 42	AE6	E	254	257	Right-handed 310
Helix 43	AE7	E	261	287	Right-handed alpha
Helix 44	AE8	E	295	324	Right-handed alpha
Helix 45	AE9	E	324	357	Right-handed alpha
Helix 46	AF1	J	87	91	Right-handed 310
Helix 47	AF2	K	62	65	Right-handed 310

There are 32 sheets in PDB entry 8SID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	A	123	128	anti-parallel
Strand 4	A	56	68	anti-parallel
Strand 5	A	36	51	anti-parallel
Strand 6	A	164	168	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	56	68	anti-parallel
Strand 3	A	36	51	anti-parallel
Strand 4	A	175	176	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	147	148	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	186	199	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	117	122	anti-parallel
Strand 3	B	127	138	anti-parallel
Strand 4	B	59	69	anti-parallel
Strand 5	B	39	54	anti-parallel
Strand 6	B	167	171	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	109	first strand
Strand 2	B	127	138	anti-parallel
Strand 3	B	59	69	anti-parallel
Strand 4	B	39	54	anti-parallel
Strand 5	B	179	181	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	209	220	anti-parallel
Strand 4	B	150	154	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	157	159	anti-parallel
Strand 3	B	209	220	anti-parallel
Strand 4	B	193	204	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	C	123	135	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	175	176	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	151	156	anti-parallel
Strand 3	C	203	215	anti-parallel
Strand 4	C	147	148	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	151	156	anti-parallel
Strand 3	C	203	215	anti-parallel
Strand 4	C	188	200	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	127	138	anti-parallel
Strand 4	D	59	68	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	167	171	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	D	127	138	anti-parallel
Strand 3	D	59	68	anti-parallel
Strand 4	D	39	54	anti-parallel
Strand 5	D	179	181	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	157	159	anti-parallel
Strand 3	D	210	218	anti-parallel
Strand 4	D	152	154	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	157	159	anti-parallel
Strand 3	D	210	218	anti-parallel
Strand 4	D	195	203	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	66	first strand
Strand 2	E	71	83	anti-parallel
Strand 3	E	138	150	anti-parallel
Strand 4	E	116	121	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	129	134	anti-parallel
Strand 3	E	138	150	anti-parallel
Strand 4	E	71	83	anti-parallel
Strand 5	E	51	57	anti-parallel
Strand 6	E	179	188	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	113	first strand
Strand 2	E	162	171	anti-parallel
Strand 3	E	219	230	anti-parallel
Strand 4	E	203	214	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	65	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	101	104	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	101	104	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	96	97	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	22	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	18	19	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	22	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	45	51	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	107	108	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	65	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	101	105	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	93	99	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	93	99	anti-parallel
Strand 4	K	105	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SID

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SID