Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SIE entry

There are 2 chains in PDB entry 8SIE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 17GLN 732
C
 SER 17GLN 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8SIE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
28 36Right-handed alpha
Helix 2
AA2
D
70 74Right-handed 310
Helix 3
AA3
D
79 109Right-handed alpha
Helix 4
AA4
D
114 131Right-handed alpha
Helix 5
AA5
D
141 156Right-handed alpha
Helix 6
AA6
D
157 162Right-handed alpha
Helix 7
AA7
D
177 207Right-handed alpha
Helix 8
AA8
D
209 215Right-handed 310
Helix 9
AA9
D
216 240Right-handed alpha
Helix 10
AB1
D
251 263Right-handed alpha
Helix 11
AB2
D
264 267Right-handed 310
Helix 12
AB3
D
268 292Right-handed alpha
Helix 13
AB4
D
301 318Right-handed alpha
Helix 14
AB5
D
318 323Right-handed alpha
Helix 15
AB6
D
342 348Right-handed 310
Helix 16
AB7
D
349 376Right-handed alpha
Helix 17
AB8
D
380 397Right-handed alpha
Helix 18
AB9
D
406 416Right-handed alpha
Helix 19
AC1
D
421 437Right-handed alpha
Helix 20
AC2
D
439 443Right-handed 310
Helix 21
AC3
D
446 458Right-handed alpha
Helix 22
AC4
D
458 463Right-handed alpha
Helix 23
AC5
D
467 475Right-handed alpha
Helix 24
AC6
D
475 492Right-handed alpha
Helix 25
AC7
D
493 515Right-handed alpha
Helix 26
AC8
D
533 537Right-handed alpha
Helix 27
AC9
D
555 571Right-handed alpha
Helix 28
AD1
D
573 585Right-handed alpha
Helix 29
AD2
D
669 686Right-handed alpha
Helix 30
AD3
D
696 706Right-handed alpha
Helix 31
AD4
D
723 732Right-handed alpha
Helix 32
AD5
C
28 36Right-handed alpha
Helix 33
AD6
C
70 74Right-handed 310
Helix 34
AD7
C
79 109Right-handed alpha
Helix 35
AD8
C
114 131Right-handed alpha
Helix 36
AD9
C
141 156Right-handed alpha
Helix 37
AE1
C
157 162Right-handed alpha
Helix 38
AE2
C
177 207Right-handed alpha
Helix 39
AE3
C
209 215Right-handed 310
Helix 40
AE4
C
216 240Right-handed alpha
Helix 41
AE5
C
251 263Right-handed alpha
Helix 42
AE6
C
264 267Right-handed 310
Helix 43
AE7
C
268 292Right-handed alpha
Helix 44
AE8
C
301 318Right-handed alpha
Helix 45
AE9
C
318 323Right-handed alpha
Helix 46
AF1
C
342 348Right-handed 310
Helix 47
AF2
C
349 376Right-handed alpha
Helix 48
AF3
C
380 397Right-handed alpha
Helix 49
AF4
C
406 416Right-handed alpha
Helix 50
AF5
C
421 437Right-handed alpha
Helix 51
AF6
C
439 443Right-handed 310
Helix 52
AF7
C
446 458Right-handed alpha
Helix 53
AF8
C
458 463Right-handed alpha
Helix 54
AF9
C
467 475Right-handed alpha
Helix 55
AG1
C
475 492Right-handed alpha
Helix 56
AG2
C
493 515Right-handed alpha
Helix 57
AG3
C
533 537Right-handed alpha
Helix 58
AG4
C
555 571Right-handed alpha
Helix 59
AG5
C
573 585Right-handed alpha
Helix 60
AG6
C
669 686Right-handed alpha
Helix 61
AG7
C
696 706Right-handed alpha
Helix 62
AG8
C
723 732Right-handed alpha
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There are 5 sheets in PDB entry 8SIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 25first strand
Strand 2
C
19 25anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
138 139first strand
Strand 2
D
404 405anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
530 532first strand
Strand 2
D
518 523anti-parallel
Strand 3
D
545 550anti-parallel
Strand 4
D
657 661parallel
Strand 5
D
689 693parallel
Strand 6
D
718 719parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
138 139first strand
Strand 2
C
404 405anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
530 532first strand
Strand 2
C
518 523anti-parallel
Strand 3
C
545 550anti-parallel
Strand 4
C
657 661parallel
Strand 5
C
689 693parallel
Strand 6
C
718 719parallel
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