Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SIJ entry

There are 2 chains in PDB entry 8SIJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ILE 461
B
 ALA 2ILE 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8SIJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
36 40Right-handed 310
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
60 69Right-handed alpha
Helix 5
AA5
A
76 91Right-handed alpha
Helix 6
AA6
A
100 113Right-handed alpha
Helix 7
AA7
A
161 172Right-handed alpha
Helix 8
AA8
A
186 190Right-handed 310
Helix 9
AA9
A
195 209Right-handed alpha
Helix 10
AB1
A
219 231Right-handed alpha
Helix 11
AB2
A
238 247Right-handed alpha
Helix 12
AB3
A
277 290Right-handed alpha
Helix 13
AB4
A
299 313Right-handed alpha
Helix 14
AB5
A
315 337Right-handed alpha
Helix 15
AB6
A
353 357Right-handed alpha
Helix 16
AB7
A
361 364Right-handed 310
Helix 17
AB8
A
365 379Right-handed alpha
Helix 18
AB9
A
386 391Right-handed alpha
Helix 19
AC1
A
417 435Right-handed alpha
Helix 20
AC2
A
436 438Right-handed 310
Helix 21
AC3
A
451 456Right-handed alpha
Helix 22
AC4
B
22 32Right-handed alpha
Helix 23
AC5
B
36 40Right-handed 310
Helix 24
AC6
B
41 45Right-handed 310
Helix 25
AC7
B
60 69Right-handed alpha
Helix 26
AC8
B
76 91Right-handed alpha
Helix 27
AC9
B
100 109Right-handed alpha
Helix 28
AD1
B
110 112Right-handed 310
Helix 29
AD2
B
161 173Right-handed alpha
Helix 30
AD3
B
186 190Right-handed 310
Helix 31
AD4
B
195 210Right-handed alpha
Helix 32
AD5
B
219 231Right-handed alpha
Helix 33
AD6
B
238 249Right-handed alpha
Helix 34
AD7
B
277 290Right-handed alpha
Helix 35
AD8
B
299 313Right-handed alpha
Helix 36
AD9
B
315 336Right-handed alpha
Helix 37
AE1
B
353 357Right-handed alpha
Helix 38
AE2
B
361 364Right-handed 310
Helix 39
AE3
B
365 379Right-handed alpha
Helix 40
AE4
B
386 391Right-handed alpha
Helix 41
AE5
B
417 434Right-handed alpha
Helix 42
AE6
B
435 438Right-handed 310
Helix 43
AE7
B
451 456Right-handed alpha
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There are 8 sheets in PDB entry 8SIJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
B
10 17parallel
Strand 3
A
10 17anti-parallel
Strand 4
B
58 59parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
380 381parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
252 256anti-parallel
Strand 4
A
213 216parallel
Strand 5
A
180 183parallel
Strand 6
A
119 121parallel
Strand 7
A
132 134parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 352first strand
Strand 2
A
406 410anti-parallel
Strand 3
A
383 385anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 446first strand
Strand 2
A
457 460anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
380 381parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
267 271anti-parallel
Strand 3
B
252 256anti-parallel
Strand 4
B
213 216parallel
Strand 5
B
177 183parallel
Strand 6
B
118 121parallel
Strand 7
B
132 134parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 352first strand
Strand 2
B
406 410anti-parallel
Strand 3
B
383 385anti-parallel
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