Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SIK entry

There are 8 chains in PDB entry 8SIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 6LYS 149
A
 THR 104GLY 568
D
 THR 6LYS 149
F
 THR 6LYS 149
H
 THR 6LYS 149
G
 THR 104GLY 568
C
 THR 104GLY 568
E
 THR 104GLY 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 8SIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 22Right-handed alpha
Helix 2
AA2
B
29 41Right-handed alpha
Helix 3
AA3
B
45 57Right-handed alpha
Helix 4
AA4
B
65 74Right-handed alpha
Helix 5
AA5
B
79 92Right-handed alpha
Helix 6
AA6
B
103 113Right-handed alpha
Helix 7
AA7
B
118 129Right-handed alpha
Helix 8
AA8
B
139 149Right-handed alpha
Helix 9
AA9
A
105 115Right-handed alpha
Helix 10
AB1
A
120 144Right-handed alpha
Helix 11
AB2
A
148 178Right-handed alpha
Helix 12
AB3
A
179 181Right-handed 310
Helix 13
AB4
A
185 196Right-handed alpha
Helix 14
AB5
A
196 216Right-handed alpha
Helix 15
AB6
A
224 237Right-handed alpha
Helix 16
AB7
A
238 242Right-handed 310
Helix 17
AB8
A
245 258Right-handed alpha
Helix 18
AB9
A
258 284Right-handed alpha
Helix 19
AC1
A
298 311Right-handed alpha
Helix 20
AC2
A
322 358Right-handed alpha
Helix 21
AC3
A
359 361Right-handed 310
Helix 22
AC4
A
363 366Right-handed 310
Helix 23
AC5
A
367 384Right-handed alpha
Helix 24
AC6
A
389 396Right-handed 310
Helix 25
AC7
A
509 533Right-handed alpha
Helix 26
AC8
A
537 568Right-handed alpha
Helix 27
AC9
D
7 22Right-handed alpha
Helix 28
AD1
D
29 41Right-handed alpha
Helix 29
AD2
D
45 57Right-handed alpha
Helix 30
AD3
D
65 74Right-handed alpha
Helix 31
AD4
D
79 92Right-handed alpha
Helix 32
AD5
D
103 113Right-handed alpha
Helix 33
AD6
D
118 129Right-handed alpha
Helix 34
AD7
D
139 149Right-handed alpha
Helix 35
AD8
F
7 22Right-handed alpha
Helix 36
AD9
F
29 41Right-handed alpha
Helix 37
AE1
F
45 57Right-handed alpha
Helix 38
AE2
F
65 74Right-handed alpha
Helix 39
AE3
F
79 92Right-handed alpha
Helix 40
AE4
F
103 113Right-handed alpha
Helix 41
AE5
F
118 129Right-handed alpha
Helix 42
AE6
F
139 147Right-handed alpha
Helix 43
AE7
H
7 22Right-handed alpha
Helix 44
AE8
H
29 41Right-handed alpha
Helix 45
AE9
H
45 57Right-handed alpha
Helix 46
AF1
H
65 74Right-handed alpha
Helix 47
AF2
H
79 92Right-handed alpha
Helix 48
AF3
H
103 113Right-handed alpha
Helix 49
AF4
H
118 129Right-handed alpha
Helix 50
AF5
H
139 149Right-handed alpha
Helix 51
AF6
G
105 115Right-handed alpha
Helix 52
AF7
G
120 145Right-handed alpha
Helix 53
AF8
G
148 178Right-handed alpha
Helix 54
AF9
G
179 181Right-handed 310
Helix 55
AG1
G
185 194Right-handed alpha
Helix 56
AG2
G
196 216Right-handed alpha
Helix 57
AG3
G
224 237Right-handed alpha
Helix 58
AG4
G
238 242Right-handed 310
Helix 59
AG5
G
245 258Right-handed alpha
Helix 60
AG6
G
258 284Right-handed alpha
Helix 61
AG7
G
298 311Right-handed alpha
Helix 62
AG8
G
322 358Right-handed alpha
Helix 63
AG9
G
359 361Right-handed 310
Helix 64
AH1
G
363 366Right-handed 310
Helix 65
AH2
G
367 384Right-handed alpha
Helix 66
AH3
G
389 396Right-handed 310
Helix 67
AH4
G
509 533Right-handed alpha
Helix 68
AH5
G
537 568Right-handed alpha
Helix 69
AH6
C
105 115Right-handed alpha
Helix 70
AH7
C
120 145Right-handed alpha
Helix 71
AH8
C
148 178Right-handed alpha
Helix 72
AH9
C
179 181Right-handed 310
Helix 73
AI1
C
185 195Right-handed alpha
Helix 74
AI2
C
196 216Right-handed alpha
Helix 75
AI3
C
224 237Right-handed alpha
Helix 76
AI4
C
238 242Right-handed 310
Helix 77
AI5
C
245 258Right-handed alpha
Helix 78
AI6
C
258 284Right-handed alpha
Helix 79
AI7
C
298 311Right-handed alpha
Helix 80
AI8
C
322 358Right-handed alpha
Helix 81
AI9
C
359 361Right-handed 310
Helix 82
AJ1
C
363 366Right-handed 310
Helix 83
AJ2
C
367 384Right-handed alpha
Helix 84
AJ3
C
389 396Right-handed 310
Helix 85
AJ4
C
509 533Right-handed alpha
Helix 86
AJ5
C
537 568Right-handed alpha
Helix 87
AJ6
E
105 115Right-handed alpha
Helix 88
AJ7
E
120 145Right-handed alpha
Helix 89
AJ8
E
148 178Right-handed alpha
Helix 90
AJ9
E
179 181Right-handed 310
Helix 91
AK1
E
185 194Right-handed alpha
Helix 92
AK2
E
196 216Right-handed alpha
Helix 93
AK3
E
224 237Right-handed alpha
Helix 94
AK4
E
238 242Right-handed 310
Helix 95
AK5
E
245 258Right-handed alpha
Helix 96
AK6
E
258 285Right-handed alpha
Helix 97
AK7
E
298 311Right-handed alpha
Helix 98
AK8
E
322 358Right-handed alpha
Helix 99
AK9
E
359 361Right-handed 310
Helix 100
AL1
E
363 366Right-handed 310
Helix 101
AL2
E
367 384Right-handed alpha
Helix 102
AL3
E
389 396Right-handed 310
Helix 103
AL4
E
509 533Right-handed alpha
Helix 104
AL5
E
537 567Right-handed alpha
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There are 4 sheets in PDB entry 8SIK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
136 138anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 102first strand
Strand 2
D
136 138anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
100 102first strand
Strand 2
F
136 138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
100 102first strand
Strand 2
H
136 138anti-parallel
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