Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SIM entry

There are 8 chains in PDB entry 8SIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 6LYS 149
D
 THR 6LYS 149
F
 THR 6LYS 149
H
 THR 6LYS 149
E
 THR 104GLY 568
A
 THR 104GLY 568
G
 THR 104GLY 568
C
 THR 104GLY 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are100 helices in PDB entry 8SIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
6 22Right-handed alpha
Helix 2
AA2
B
29 41Right-handed alpha
Helix 3
AA3
B
45 57Right-handed alpha
Helix 4
AA4
B
66 74Right-handed alpha
Helix 5
AA5
B
79 93Right-handed alpha
Helix 6
AA6
B
102 113Right-handed alpha
Helix 7
AA7
B
118 129Right-handed alpha
Helix 8
AA8
B
138 149Right-handed alpha
Helix 9
AA9
D
7 22Right-handed alpha
Helix 10
AB1
D
29 41Right-handed alpha
Helix 11
AB2
D
45 57Right-handed alpha
Helix 12
AB3
D
66 74Right-handed alpha
Helix 13
AB4
D
79 93Right-handed alpha
Helix 14
AB5
D
102 113Right-handed alpha
Helix 15
AB6
D
118 129Right-handed alpha
Helix 16
AB7
D
138 149Right-handed alpha
Helix 17
AB8
F
7 22Right-handed alpha
Helix 18
AB9
F
29 41Right-handed alpha
Helix 19
AC1
F
45 57Right-handed alpha
Helix 20
AC2
F
66 74Right-handed alpha
Helix 21
AC3
F
79 93Right-handed alpha
Helix 22
AC4
F
102 113Right-handed alpha
Helix 23
AC5
F
118 129Right-handed alpha
Helix 24
AC6
F
138 149Right-handed alpha
Helix 25
AC7
H
7 22Right-handed alpha
Helix 26
AC8
H
29 41Right-handed alpha
Helix 27
AC9
H
45 57Right-handed alpha
Helix 28
AD1
H
66 74Right-handed alpha
Helix 29
AD2
H
79 93Right-handed alpha
Helix 30
AD3
H
102 113Right-handed alpha
Helix 31
AD4
H
118 129Right-handed alpha
Helix 32
AD5
H
138 149Right-handed alpha
Helix 33
AD6
E
105 115Right-handed alpha
Helix 34
AD7
E
120 144Right-handed alpha
Helix 35
AD8
E
145 149Right-handed 310
Helix 36
AD9
E
150 178Right-handed alpha
Helix 37
AE1
E
179 184Right-handed 310
Helix 38
AE2
E
185 195Right-handed alpha
Helix 39
AE3
E
196 218Right-handed alpha
Helix 40
AE4
E
224 239Right-handed alpha
Helix 41
AE5
E
240 242Right-handed 310
Helix 42
AE6
E
247 258Right-handed alpha
Helix 43
AE7
E
258 284Right-handed alpha
Helix 44
AE8
E
298 311Right-handed alpha
Helix 45
AE9
E
322 358Right-handed alpha
Helix 46
AF1
E
367 384Right-handed alpha
Helix 47
AF2
E
391 395Right-handed 310
Helix 48
AF3
E
510 534Right-handed alpha
Helix 49
AF4
E
537 568Right-handed alpha
Helix 50
AF5
A
105 115Right-handed alpha
Helix 51
AF6
A
120 144Right-handed alpha
Helix 52
AF7
A
145 149Right-handed 310
Helix 53
AF8
A
150 178Right-handed alpha
Helix 54
AF9
A
179 184Right-handed 310
Helix 55
AG1
A
185 195Right-handed alpha
Helix 56
AG2
A
196 218Right-handed alpha
Helix 57
AG3
A
224 239Right-handed alpha
Helix 58
AG4
A
240 242Right-handed 310
Helix 59
AG5
A
247 258Right-handed alpha
Helix 60
AG6
A
258 284Right-handed alpha
Helix 61
AG7
A
298 311Right-handed alpha
Helix 62
AG8
A
322 358Right-handed alpha
Helix 63
AG9
A
367 384Right-handed alpha
Helix 64
AH1
A
391 395Right-handed 310
Helix 65
AH2
A
510 534Right-handed alpha
Helix 66
AH3
A
537 568Right-handed alpha
Helix 67
AH4
G
105 115Right-handed alpha
Helix 68
AH5
G
120 144Right-handed alpha
Helix 69
AH6
G
145 149Right-handed 310
Helix 70
AH7
G
150 178Right-handed alpha
Helix 71
AH8
G
179 184Right-handed 310
Helix 72
AH9
G
185 195Right-handed alpha
Helix 73
AI1
G
196 218Right-handed alpha
Helix 74
AI2
G
224 239Right-handed alpha
Helix 75
AI3
G
240 242Right-handed 310
Helix 76
AI4
G
247 258Right-handed alpha
Helix 77
AI5
G
258 284Right-handed alpha
Helix 78
AI6
G
298 311Right-handed alpha
Helix 79
AI7
G
322 358Right-handed alpha
Helix 80
AI8
G
367 384Right-handed alpha
Helix 81
AI9
G
391 395Right-handed 310
Helix 82
AJ1
G
510 534Right-handed alpha
Helix 83
AJ2
G
537 568Right-handed alpha
Helix 84
AJ3
C
105 115Right-handed alpha
Helix 85
AJ4
C
120 144Right-handed alpha
Helix 86
AJ5
C
145 149Right-handed 310
Helix 87
AJ6
C
150 178Right-handed alpha
Helix 88
AJ7
C
179 184Right-handed 310
Helix 89
AJ8
C
185 195Right-handed alpha
Helix 90
AJ9
C
196 218Right-handed alpha
Helix 91
AK1
C
224 239Right-handed alpha
Helix 92
AK2
C
240 242Right-handed 310
Helix 93
AK3
C
247 258Right-handed alpha
Helix 94
AK4
C
258 284Right-handed alpha
Helix 95
AK5
C
298 311Right-handed alpha
Helix 96
AK6
C
322 358Right-handed alpha
Helix 97
AK7
C
367 384Right-handed alpha
Helix 98
AK8
C
391 395Right-handed 310
Helix 99
AK9
C
510 534Right-handed alpha
Helix 100
AL1
C
537 568Right-handed alpha
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There are 4 sheets in PDB entry 8SIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
64 65anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 28first strand
Strand 2
D
64 65anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
27 28first strand
Strand 2
F
64 65anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
27 28first strand
Strand 2
H
64 65anti-parallel
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