Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SIT entry

There are 7 chains in PDB entry 8SIT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 334	LYS 528
B	ASN 334	LYS 528
C	ASN 334	LYS 528
D	LEU 335	CYS 525
H	GLU 1	PRO 213
L	GLN 1	PRO 209
M	GLU 1	PRO 123

There are 40 helices in PDB entry 8SIT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	337	343	Right-handed alpha
Helix 2	AA2	A	365	370	Right-handed alpha
Helix 3	AA3	A	386	389	Right-handed 310
Helix 4	AA4	A	406	411	Right-handed alpha
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	B	337	343	Right-handed alpha
Helix 8	AA8	B	365	370	Right-handed alpha
Helix 9	AA9	B	386	390	Right-handed 310
Helix 10	AB1	B	406	411	Right-handed alpha
Helix 11	AB2	B	416	422	Right-handed alpha
Helix 12	AB3	B	438	443	Right-handed alpha
Helix 13	AB4	C	337	343	Right-handed alpha
Helix 14	AB5	C	365	370	Right-handed alpha
Helix 15	AB6	C	383	388	Right-handed alpha
Helix 16	AB7	C	406	411	Right-handed alpha
Helix 17	AB8	C	416	422	Right-handed alpha
Helix 18	AB9	C	438	443	Right-handed alpha
Helix 19	AC1	D	337	343	Right-handed alpha
Helix 20	AC2	D	365	370	Right-handed alpha
Helix 21	AC3	D	404	411	Right-handed alpha
Helix 22	AC4	D	416	422	Right-handed alpha
Helix 23	AC5	D	438	443	Right-handed alpha
Helix 24	AC6	H	83	87	Right-handed 310
Helix 25	AC7	L	27	32	Right-handed alpha
Helix 26	AC8	L	122	129	Right-handed alpha
Helix 27	AC9	L	182	189	Right-handed alpha
Helix 28	AD1	M	83	87	Right-handed 310
Helix 29	AD2	M	156	158	Right-handed 310
Helix 30	AD3	M	187	192	Right-handed alpha
Helix 31	AD4	N	122	128	Right-handed alpha
Helix 32	AD5	N	182	189	Right-handed alpha
Helix 33	AD6	O	83	87	Right-handed 310
Helix 34	AD7	O	156	158	Right-handed 310
Helix 35	AD8	O	186	192	Right-handed alpha
Helix 36	AD9	P	122	128	Right-handed alpha
Helix 37	AE1	P	182	189	Right-handed alpha
Helix 38	AE2	Q	83	87	Right-handed 310
Helix 39	AE3	S	122	128	Right-handed alpha
Helix 40	AE4	S	182	187	Right-handed alpha

There are 62 sheets in PDB entry 8SIT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel
Strand 6	M	99	100	anti-parallel
Strand 7	M	100	100	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	524	525	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel
Strand 6	O	99	100	anti-parallel
Strand 7	O	100	100	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	524	525	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	394	403	anti-parallel
Strand 3	D	507	516	anti-parallel
Strand 4	D	431	437	anti-parallel
Strand 5	D	376	380	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	361	362	first strand
Strand 2	D	524	525	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	454	first strand
Strand 2	D	492	494	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	488	489	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	8	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	94	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	100	100	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	176	183	anti-parallel
Strand 4	H	164	165	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	124	first strand
Strand 2	H	137	145	anti-parallel
Strand 3	H	176	183	anti-parallel
Strand 4	H	169	170	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	154	first strand
Strand 2	H	194	200	anti-parallel
Strand 3	H	205	211	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	24	first strand
Strand 2	L	70	75	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	160	162	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	173	181	anti-parallel
Strand 4	L	166	167	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	154	156	first strand
Strand 2	L	146	151	anti-parallel
Strand 3	L	192	198	anti-parallel
Strand 4	L	201	207	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	8	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	11	first strand
Strand 2	M	107	110	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	45	52	anti-parallel
Strand 6	M	56	59	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	11	first strand
Strand 2	M	107	110	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	102	103	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	120	124	first strand
Strand 2	M	135	145	anti-parallel
Strand 3	M	176	185	anti-parallel
Strand 4	M	163	165	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	120	124	first strand
Strand 2	M	135	145	anti-parallel
Strand 3	M	176	185	anti-parallel
Strand 4	M	169	170	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	151	154	first strand
Strand 2	M	194	200	anti-parallel
Strand 3	M	205	211	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	92	anti-parallel
Strand 4	N	34	38	anti-parallel
Strand 5	N	45	48	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	102	106	parallel
Strand 3	N	85	92	anti-parallel
Strand 4	N	95	98	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	67	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	115	119	first strand
Strand 2	N	131	140	anti-parallel
Strand 3	N	173	181	anti-parallel
Strand 4	N	160	162	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	115	119	first strand
Strand 2	N	131	140	anti-parallel
Strand 3	N	173	181	anti-parallel
Strand 4	N	166	167	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	154	156	first strand
Strand 2	N	146	151	anti-parallel
Strand 3	N	192	198	anti-parallel
Strand 4	N	201	207	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	6	first strand
Strand 2	O	18	25	anti-parallel
Strand 3	O	77	82	anti-parallel
Strand 4	O	67	72	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	45	51	anti-parallel
Strand 3	O	34	39	anti-parallel
Strand 4	O	89	94	anti-parallel
Strand 5	O	102	103	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	45	51	anti-parallel
Strand 3	O	34	39	anti-parallel
Strand 4	O	89	94	anti-parallel
Strand 5	O	107	108	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	120	124	first strand
Strand 2	O	135	145	anti-parallel
Strand 3	O	176	185	anti-parallel
Strand 4	O	163	165	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	120	124	first strand
Strand 2	O	135	145	anti-parallel
Strand 3	O	176	185	anti-parallel
Strand 4	O	169	170	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	151	154	first strand
Strand 2	O	194	200	anti-parallel
Strand 3	O	205	211	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	9	13	first strand
Strand 2	P	102	106	parallel
Strand 3	P	85	92	anti-parallel
Strand 4	P	34	38	anti-parallel
Strand 5	P	45	48	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	9	13	first strand
Strand 2	P	102	106	parallel
Strand 3	P	85	92	anti-parallel
Strand 4	P	95	98	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	19	24	first strand
Strand 2	P	70	75	anti-parallel
Strand 3	P	62	67	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	115	119	first strand
Strand 2	P	131	140	anti-parallel
Strand 3	P	173	181	anti-parallel
Strand 4	P	160	162	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	154	155	first strand
Strand 2	P	146	151	anti-parallel
Strand 3	P	192	198	anti-parallel
Strand 4	P	201	207	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	3	8	first strand
Strand 2	Q	20	25	anti-parallel
Strand 3	Q	77	82	anti-parallel
Strand 4	Q	67	72	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	11	12	first strand
Strand 2	Q	107	111	parallel
Strand 3	Q	88	95	anti-parallel
Strand 4	Q	33	39	anti-parallel
Strand 5	Q	45	50	anti-parallel
Strand 6	Q	58	59	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	11	12	first strand
Strand 2	Q	107	111	parallel
Strand 3	Q	88	95	anti-parallel
Strand 4	Q	102	103	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	99	100	first strand
Strand 2	Q	100	100	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	121	124	first strand
Strand 2	Q	138	142	anti-parallel
Strand 3	Q	176	182	anti-parallel
Strand 4	Q	163	170	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	151	154	first strand
Strand 2	Q	195	200	anti-parallel
Strand 3	Q	205	210	anti-parallel

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There are 5 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	9	13	first strand
Strand 2	S	102	106	parallel
Strand 3	S	85	91	anti-parallel
Strand 4	S	34	38	anti-parallel
Strand 5	S	45	48	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	9	13	first strand
Strand 2	S	102	106	parallel
Strand 3	S	85	91	anti-parallel
Strand 4	S	96	98	anti-parallel

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There are 3 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	19	24	first strand
Strand 2	S	70	75	anti-parallel
Strand 3	S	62	67	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	115	118	first strand
Strand 2	S	135	140	anti-parallel
Strand 3	S	173	178	anti-parallel
Strand 4	S	161	162	anti-parallel

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There are 4 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	154	156	first strand
Strand 2	S	146	151	anti-parallel
Strand 3	S	192	198	anti-parallel
Strand 4	S	201	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SIT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIT