Analysis of interatomic Contacts of Structural Units in PDB entry:
8SIU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SIU entry

There are 2 chains in PDB entry 8SIU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -2ARG 647
B
 VAL 11ASP 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 4 helices in PDB entry 8SIU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
281 285Right-handed 310
Helix 2
AA2
A
527 533Right-handed alpha
Helix 3
AA3
A
564 566Right-handed 310
Helix 4
AA4
A
583 589Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8SIU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
621 626first strand
Strand 2
A
632 637anti-parallel
Strand 3
A
642 646anti-parallel
Strand 4
A
272 278anti-parallel
Strand 5
B
14 16parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 298first strand
Strand 2
A
313 318anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
332 337anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 351first strand
Strand 2
A
363 370anti-parallel
Strand 3
A
374 379anti-parallel
Strand 4
A
384 390anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 401first strand
Strand 2
A
408 413anti-parallel
Strand 3
A
417 422anti-parallel
Strand 4
A
435 441anti-parallel
Strand 5
A
481 483parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 451first strand
Strand 2
A
459 464anti-parallel
Strand 3
A
467 472anti-parallel
Strand 4
A
486 489anti-parallel
Strand 5
A
539 541parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 506first strand
Strand 2
A
511 515anti-parallel
Strand 3
A
521 526anti-parallel
Strand 4
A
544 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 563first strand
Strand 2
A
568 572anti-parallel
Strand 3
A
578 582anti-parallel
Strand 4
A
602 604anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 611first strand
Strand 2
A
614 615anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il