Analysis of interatomic Contacts of Structural Units in PDB entry:
8SJ2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SJ2 entry

There are 6 chains in PDB entry 8SJ2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 146LYS 506
C
 LYS 149LYS 506
E
 A 1 T 18
F
 A 1 T 18
I
 A 1 T 18
J
 A 1 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 8SJ2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 158Right-handed alpha
Helix 2
AA2
A
160 182Right-handed alpha
Helix 3
AA3
A
248 250Right-handed 310
Helix 4
AA4
A
258 276Right-handed alpha
Helix 5
AA5
A
319 323Right-handed 310
Helix 6
AA6
A
333 342Right-handed alpha
Helix 7
AA7
A
358 360Right-handed 310
Helix 8
AA8
A
367 377Right-handed alpha
Helix 9
AA9
A
393 412Right-handed alpha
Helix 10
AB1
A
413 416Right-handed 310
Helix 11
AB2
A
419 434Right-handed alpha
Helix 12
AB3
A
436 443Right-handed 310
Helix 13
AB4
A
444 463Right-handed alpha
Helix 14
AB5
A
482 499Right-handed alpha
Helix 15
AB6
A
501 506Right-handed 310
Helix 16
AB7
C
150 158Right-handed alpha
Helix 17
AB8
C
160 185Right-handed alpha
Helix 18
AB9
C
198 202Right-handed alpha
Helix 19
AC1
C
247 251Right-handed 310
Helix 20
AC2
C
258 277Right-handed alpha
Helix 21
AC3
C
319 323Right-handed 310
Helix 22
AC4
C
333 342Right-handed alpha
Helix 23
AC5
C
367 377Right-handed alpha
Helix 24
AC6
C
393 412Right-handed alpha
Helix 25
AC7
C
413 416Right-handed 310
Helix 26
AC8
C
419 434Right-handed alpha
Helix 27
AC9
C
436 443Right-handed 310
Helix 28
AD1
C
444 463Right-handed alpha
Helix 29
AD2
C
482 499Right-handed alpha
Helix 30
AD3
C
500 506Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 8SJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
303 314parallel
Strand 4
A
345 349anti-parallel
Strand 5
A
362 366anti-parallel
Strand 6
A
234 238anti-parallel
Strand 7
A
224 227anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
211 219anti-parallel
Strand 3
A
303 314parallel
Strand 4
A
294 299anti-parallel
Strand 5
A
282 284anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
256 257anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 197first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
303 314parallel
Strand 4
C
345 348anti-parallel
Strand 5
C
363 366anti-parallel
Strand 6
C
234 238anti-parallel
Strand 7
C
224 227anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 197first strand
Strand 2
C
211 219anti-parallel
Strand 3
C
303 314parallel
Strand 4
C
293 299anti-parallel
Strand 5
C
282 284anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il