Analysis of interatomic Contacts of Structural Units in PDB entry:
8SJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SJD entry

There are 10 chains in PDB entry 8SJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ARG 81LYS 609
D
 ARG 81LYS 609
B
 ARG 81LYS 609
A
 ARG 81LYS 609
J
 C 1 C 55
I
 A 2 G 47
G
 C 1 C 55
H
 G -8 A -2
E
 G -8 A -2
F
 A 2 G 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 8SJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
87 106Right-handed alpha
Helix 2
AA2
C
108 113Right-handed 310
Helix 3
AA3
C
114 132Right-handed alpha
Helix 4
AA4
C
137 141Right-handed 310
Helix 5
AA5
C
143 172Right-handed alpha
Helix 6
AA6
C
220 234Right-handed alpha
Helix 7
AA7
C
250 258Right-handed alpha
Helix 8
AA8
C
265 280Right-handed alpha
Helix 9
AA9
C
281 283Right-handed 310
Helix 10
AB1
C
284 302Right-handed alpha
Helix 11
AB2
C
303 307Right-handed 310
Helix 12
AB3
C
320 331Right-handed alpha
Helix 13
AB4
C
332 343Right-handed alpha
Helix 14
AB5
C
345 350Right-handed 310
Helix 15
AB6
C
353 375Right-handed alpha
Helix 16
AB7
C
381 383Right-handed 310
Helix 17
AB8
C
384 397Right-handed alpha
Helix 18
AB9
C
403 425Right-handed alpha
Helix 19
AC1
C
426 435Right-handed alpha
Helix 20
AC2
C
445 462Right-handed alpha
Helix 21
AC3
C
519 529Right-handed alpha
Helix 22
AC4
C
539 548Right-handed alpha
Helix 23
AC5
C
553 563Right-handed alpha
Helix 24
AC6
C
568 582Right-handed alpha
Helix 25
AC7
C
583 587Right-handed 310
Helix 26
AC8
C
590 607Right-handed alpha
Helix 27
AC9
D
87 106Right-handed alpha
Helix 28
AD1
D
108 112Right-handed 310
Helix 29
AD2
D
114 132Right-handed alpha
Helix 30
AD3
D
143 171Right-handed alpha
Helix 31
AD4
D
220 235Right-handed alpha
Helix 32
AD5
D
250 257Right-handed alpha
Helix 33
AD6
D
258 260Right-handed 310
Helix 34
AD7
D
265 280Right-handed alpha
Helix 35
AD8
D
281 283Right-handed 310
Helix 36
AD9
D
284 301Right-handed alpha
Helix 37
AE1
D
320 344Right-handed alpha
Helix 38
AE2
D
345 349Right-handed 310
Helix 39
AE3
D
353 375Right-handed alpha
Helix 40
AE4
D
385 396Right-handed alpha
Helix 41
AE5
D
403 425Right-handed alpha
Helix 42
AE6
D
426 435Right-handed alpha
Helix 43
AE7
D
438 443Right-handed 310
Helix 44
AE8
D
444 462Right-handed alpha
Helix 45
AE9
D
519 529Right-handed alpha
Helix 46
AF1
D
539 548Right-handed alpha
Helix 47
AF2
D
551 563Right-handed alpha
Helix 48
AF3
D
568 582Right-handed alpha
Helix 49
AF4
D
590 608Right-handed alpha
Helix 50
AF5
B
87 105Right-handed alpha
Helix 51
AF6
B
108 113Right-handed 310
Helix 52
AF7
B
114 132Right-handed alpha
Helix 53
AF8
B
136 141Right-handed alpha
Helix 54
AF9
B
143 172Right-handed alpha
Helix 55
AG1
B
220 235Right-handed alpha
Helix 56
AG2
B
250 258Right-handed alpha
Helix 57
AG3
B
265 280Right-handed alpha
Helix 58
AG4
B
281 283Right-handed 310
Helix 59
AG5
B
284 301Right-handed alpha
Helix 60
AG6
B
320 344Right-handed alpha
Helix 61
AG7
B
345 349Right-handed 310
Helix 62
AG8
B
353 375Right-handed alpha
Helix 63
AG9
B
381 383Right-handed 310
Helix 64
AH1
B
384 396Right-handed alpha
Helix 65
AH2
B
403 425Right-handed alpha
Helix 66
AH3
B
426 435Right-handed alpha
Helix 67
AH4
B
445 464Right-handed alpha
Helix 68
AH5
B
519 530Right-handed alpha
Helix 69
AH6
B
539 547Right-handed alpha
Helix 70
AH7
B
553 563Right-handed alpha
Helix 71
AH8
B
568 582Right-handed alpha
Helix 72
AH9
B
583 587Right-handed 310
Helix 73
AI1
B
590 607Right-handed alpha
Helix 74
AI2
A
87 105Right-handed alpha
Helix 75
AI3
A
108 113Right-handed 310
Helix 76
AI4
A
114 132Right-handed alpha
Helix 77
AI5
A
136 141Right-handed alpha
Helix 78
AI6
A
143 172Right-handed alpha
Helix 79
AI7
A
220 235Right-handed alpha
Helix 80
AI8
A
250 257Right-handed alpha
Helix 81
AI9
A
265 280Right-handed alpha
Helix 82
AJ1
A
281 283Right-handed 310
Helix 83
AJ2
A
284 301Right-handed alpha
Helix 84
AJ3
A
320 343Right-handed alpha
Helix 85
AJ4
A
348 352Right-handed 310
Helix 86
AJ5
A
353 376Right-handed alpha
Helix 87
AJ6
A
385 396Right-handed alpha
Helix 88
AJ7
A
403 420Right-handed alpha
Helix 89
AJ8
A
426 435Right-handed alpha
Helix 90
AJ9
A
445 465Right-handed alpha
Helix 91
AK1
A
519 530Right-handed alpha
Helix 92
AK2
A
539 548Right-handed alpha
Helix 93
AK3
A
551 563Right-handed alpha
Helix 94
AK4
A
568 582Right-handed alpha
Helix 95
AK5
A
583 587Right-handed 310
Helix 96
AK6
A
590 608Right-handed alpha
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There are 6 sheets in PDB entry 8SJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 208first strand
Strand 2
C
191 198anti-parallel
Strand 3
C
212 213anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 208first strand
Strand 2
C
191 198anti-parallel
Strand 3
C
175 182anti-parallel
Strand 4
C
244 247parallel
Strand 5
C
262 264parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
203 213first strand
Strand 2
D
190 200anti-parallel
Strand 3
D
176 183anti-parallel
Strand 4
D
244 246parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
244 247parallel
Strand 3
B
261 264parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
190 200anti-parallel
Strand 3
B
203 213anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 211first strand
Strand 2
A
193 200anti-parallel
Strand 3
A
175 180anti-parallel
Strand 4
A
244 247parallel
Strand 5
A
263 264parallel
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