Analysis of interatomic Contacts of Structural Units in PDB entry:
8SK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SK0 entry

There are 2 chains in PDB entry 8SK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -4ASP 324
B
 LEU -5ASP 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8SK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
45 50Right-handed 310
Helix 3
AA3
A
65 73Right-handed alpha
Helix 4
AA4
A
87 94Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
103 117Right-handed alpha
Helix 7
AA7
A
128 131Right-handed 310
Helix 8
AA8
A
148 169Right-handed alpha
Helix 9
AA9
A
189 200Right-handed alpha
Helix 10
AB1
A
219 233Right-handed alpha
Helix 11
AB2
A
249 261Right-handed alpha
Helix 12
AB3
A
263 265Right-handed 310
Helix 13
AB4
A
284 289Right-handed alpha
Helix 14
AB5
A
297 312Right-handed alpha
Helix 15
AB6
A
312 324Right-handed alpha
Helix 16
AB7
B
11 24Right-handed alpha
Helix 17
AB8
B
45 54Right-handed 310
Helix 18
AB9
B
65 73Right-handed alpha
Helix 19
AC1
B
87 94Right-handed alpha
Helix 20
AC2
B
95 103Right-handed alpha
Helix 21
AC3
B
103 117Right-handed alpha
Helix 22
AC4
B
128 131Right-handed 310
Helix 23
AC5
B
148 169Right-handed alpha
Helix 24
AC6
B
189 200Right-handed alpha
Helix 25
AC7
B
219 233Right-handed alpha
Helix 26
AC8
B
249 261Right-handed alpha
Helix 27
AC9
B
263 265Right-handed 310
Helix 28
AD1
B
284 289Right-handed alpha
Helix 29
AD2
B
297 312Right-handed alpha
Helix 30
AD3
B
312 324Right-handed alpha
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There are 7 sheets in PDB entry 8SK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
33 38parallel
Strand 3
A
3 7parallel
Strand 4
A
78 81parallel
Strand 5
A
120 126parallel
Strand 6
A
172 177parallel
Strand 7
A
238 241parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
213 218parallel
Strand 3
A
246 248anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
267 270parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
33 38parallel
Strand 3
B
3 7parallel
Strand 4
B
78 81parallel
Strand 5
B
120 126parallel
Strand 6
B
172 177parallel
Strand 7
B
238 241parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 181first strand
Strand 2
B
217 218parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 207first strand
Strand 2
B
267 270parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 215first strand
Strand 2
B
246 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il