Analysis of interatomic Contacts of Structural Units in PDB entry:
8SK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SK1 entry

There are 2 chains in PDB entry 8SK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ASN 161
B
 MET 1LYS 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8SK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
67 82Right-handed alpha
Helix 3
AA3
A
118 121Right-handed 310
Helix 4
AA4
A
122 133Right-handed alpha
Helix 5
AA5
A
133 140Right-handed alpha
Helix 6
AA6
A
141 153Right-handed alpha
Helix 7
AA7
B
15 29Right-handed alpha
Helix 8
AA8
B
67 82Right-handed alpha
Helix 9
AA9
B
118 121Right-handed 310
Helix 10
AB1
B
122 133Right-handed alpha
Helix 11
AB2
B
134 137Right-handed 310
Helix 12
AB3
B
141 153Right-handed alpha
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There are 6 sheets in PDB entry 8SK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
3 11anti-parallel
Strand 4
A
96 102anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 38first strand
Strand 2
A
55 64anti-parallel
Strand 3
A
41 44anti-parallel
Strand 4
A
154 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
113 114anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
55 64anti-parallel
Strand 3
B
4 11anti-parallel
Strand 4
B
96 102anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 38first strand
Strand 2
B
55 64anti-parallel
Strand 3
B
41 44anti-parallel
Strand 4
B
154 158anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 109first strand
Strand 2
B
112 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il