Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8SKG entry

There are 7 chains in PDB entry 8SKG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ALA 2	GLN 417
A	ALA 2	GLN 417
B	ALA 2	GLN 417
C	ALA 2	GLN 417
D	ALA 2	GLN 417
E	ALA 2	GLN 417
G	ALA 2	GLN 417

There are 58 helices in PDB entry 8SKG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	24	30	Right-handed alpha
Helix 2	AA2	F	36	44	Right-handed alpha
Helix 3	AA3	F	93	97	Right-handed 310
Helix 4	AA4	F	98	128	Right-handed alpha
Helix 5	AA5	F	143	160	Right-handed alpha
Helix 6	AA6	F	173	186	Right-handed alpha
Helix 7	AA7	F	191	201	Right-handed alpha
Helix 8	AA8	F	313	320	Right-handed 310
Helix 9	AA9	A	24	30	Right-handed alpha
Helix 10	AB1	A	36	44	Right-handed alpha
Helix 11	AB2	A	93	97	Right-handed 310
Helix 12	AB3	A	98	128	Right-handed alpha
Helix 13	AB4	A	143	161	Right-handed alpha
Helix 14	AB5	A	173	186	Right-handed alpha
Helix 15	AB6	A	191	201	Right-handed alpha
Helix 16	AB7	A	313	320	Right-handed 310
Helix 17	AB8	A	406	408	Right-handed 310
Helix 18	AB9	B	24	30	Right-handed alpha
Helix 19	AC1	B	36	44	Right-handed alpha
Helix 20	AC2	B	93	97	Right-handed 310
Helix 21	AC3	B	98	128	Right-handed alpha
Helix 22	AC4	B	143	161	Right-handed alpha
Helix 23	AC5	B	173	186	Right-handed alpha
Helix 24	AC6	B	191	201	Right-handed alpha
Helix 25	AC7	B	313	320	Right-handed 310
Helix 26	AC8	B	406	408	Right-handed 310
Helix 27	AC9	C	24	30	Right-handed alpha
Helix 28	AD1	C	36	44	Right-handed alpha
Helix 29	AD2	C	93	97	Right-handed 310
Helix 30	AD3	C	98	128	Right-handed alpha
Helix 31	AD4	C	143	161	Right-handed alpha
Helix 32	AD5	C	173	185	Right-handed alpha
Helix 33	AD6	C	191	201	Right-handed alpha
Helix 34	AD7	C	313	320	Right-handed 310
Helix 35	AD8	D	24	30	Right-handed alpha
Helix 36	AD9	D	36	44	Right-handed alpha
Helix 37	AE1	D	93	97	Right-handed 310
Helix 38	AE2	D	98	128	Right-handed alpha
Helix 39	AE3	D	143	161	Right-handed alpha
Helix 40	AE4	D	173	185	Right-handed alpha
Helix 41	AE5	D	191	201	Right-handed alpha
Helix 42	AE6	D	313	320	Right-handed 310
Helix 43	AE7	E	24	30	Right-handed alpha
Helix 44	AE8	E	36	44	Right-handed alpha
Helix 45	AE9	E	93	97	Right-handed 310
Helix 46	AF1	E	98	128	Right-handed alpha
Helix 47	AF2	E	143	161	Right-handed alpha
Helix 48	AF3	E	173	185	Right-handed alpha
Helix 49	AF4	E	192	201	Right-handed alpha
Helix 50	AF5	E	313	320	Right-handed 310
Helix 51	AF6	G	24	30	Right-handed alpha
Helix 52	AF7	G	36	44	Right-handed alpha
Helix 53	AF8	G	93	96	Right-handed 310
Helix 54	AF9	G	97	128	Right-handed alpha
Helix 55	AG1	G	143	161	Right-handed alpha
Helix 56	AG2	G	173	181	Right-handed alpha
Helix 57	AG3	G	194	198	Right-handed 310
Helix 58	AG4	G	313	320	Right-handed 310

There are 41 sheets in PDB entry 8SKG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	A	46	50	parallel
Strand 3	A	75	79	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	351	356	parallel
Strand 3	F	391	404	anti-parallel
Strand 4	F	378	386	anti-parallel
Strand 5	F	367	372	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	33	first strand
Strand 2	F	351	356	parallel
Strand 3	F	391	404	anti-parallel
Strand 4	F	84	91	anti-parallel
Strand 5	A	58	59	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	75	79	first strand
Strand 2	F	46	50	anti-parallel
Strand 3	E	10	11	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	E	84	91	anti-parallel
Strand 3	E	391	398	anti-parallel
Strand 4	E	378	386	anti-parallel
Strand 5	E	367	372	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	410	414	parallel
Strand 3	F	340	347	anti-parallel
Strand 4	F	168	172	anti-parallel
Strand 5	F	210	213	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	133	first strand
Strand 2	F	410	414	parallel
Strand 3	F	340	347	anti-parallel
Strand 4	F	219	220	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	253	256	first strand
Strand 2	F	299	303	anti-parallel
Strand 3	F	283	296	anti-parallel
Strand 4	F	267	276	anti-parallel
Strand 5	F	332	334	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	B	46	50	parallel
Strand 3	B	75	79	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	351	355	parallel
Strand 3	A	400	404	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	372	first strand
Strand 2	A	378	386	anti-parallel
Strand 3	A	391	398	anti-parallel
Strand 4	A	84	91	anti-parallel
Strand 5	B	58	59	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	410	414	parallel
Strand 3	A	343	347	anti-parallel
Strand 4	A	168	172	anti-parallel
Strand 5	A	210	213	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	220	first strand
Strand 2	A	340	341	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	253	257	anti-parallel
Strand 3	A	299	303	anti-parallel
Strand 4	A	283	296	anti-parallel
Strand 5	A	267	276	anti-parallel
Strand 6	A	332	334	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	C	46	50	parallel
Strand 3	C	75	79	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	351	355	parallel
Strand 3	B	400	404	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	378	386	anti-parallel
Strand 3	B	391	398	anti-parallel
Strand 4	B	84	91	anti-parallel
Strand 5	C	58	59	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	410	414	parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	168	172	anti-parallel
Strand 5	B	210	213	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	133	first strand
Strand 2	B	410	414	parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	219	220	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	256	first strand
Strand 2	B	299	303	anti-parallel
Strand 3	B	283	296	anti-parallel
Strand 4	B	267	276	anti-parallel
Strand 5	B	332	334	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	11	first strand
Strand 2	D	46	50	parallel
Strand 3	D	75	79	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	351	356	parallel
Strand 3	C	391	404	anti-parallel
Strand 4	C	378	386	anti-parallel
Strand 5	C	367	372	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	351	356	parallel
Strand 3	C	391	404	anti-parallel
Strand 4	C	84	91	anti-parallel
Strand 5	D	58	59	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	133	first strand
Strand 2	C	410	414	parallel
Strand 3	C	342	347	anti-parallel
Strand 4	C	168	172	anti-parallel
Strand 5	C	210	213	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	253	257	anti-parallel
Strand 3	C	299	303	anti-parallel
Strand 4	C	283	296	anti-parallel
Strand 5	C	267	276	anti-parallel
Strand 6	C	332	334	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	351	356	parallel
Strand 3	D	391	404	anti-parallel
Strand 4	D	378	386	anti-parallel
Strand 5	D	367	372	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	351	356	parallel
Strand 3	D	391	404	anti-parallel
Strand 4	D	84	91	anti-parallel
Strand 5	E	58	59	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	133	first strand
Strand 2	D	410	414	parallel
Strand 3	D	343	347	anti-parallel
Strand 4	D	168	172	anti-parallel
Strand 5	D	210	213	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	220	first strand
Strand 2	D	340	341	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	256	first strand
Strand 2	D	299	303	anti-parallel
Strand 3	D	283	296	anti-parallel
Strand 4	D	267	276	anti-parallel
Strand 5	D	332	334	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	33	first strand
Strand 2	E	351	355	parallel
Strand 3	E	400	404	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	50	first strand
Strand 2	E	75	79	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	133	first strand
Strand 2	E	410	414	parallel
Strand 3	E	343	347	anti-parallel
Strand 4	E	168	172	anti-parallel
Strand 5	E	210	213	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	219	220	first strand
Strand 2	E	340	341	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	230	231	first strand
Strand 2	E	253	257	anti-parallel
Strand 3	E	299	303	anti-parallel
Strand 4	E	283	296	anti-parallel
Strand 5	E	267	276	anti-parallel
Strand 6	E	332	334	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	33	first strand
Strand 2	G	351	356	parallel
Strand 3	G	391	404	anti-parallel
Strand 4	G	84	91	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	33	first strand
Strand 2	G	351	356	parallel
Strand 3	G	391	404	anti-parallel
Strand 4	G	378	386	anti-parallel
Strand 5	G	367	372	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	50	first strand
Strand 2	G	75	79	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	133	first strand
Strand 2	G	410	414	parallel
Strand 3	G	343	347	anti-parallel
Strand 4	G	168	172	anti-parallel
Strand 5	G	209	213	parallel
Strand 6	G	202	206	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	219	220	first strand
Strand 2	G	340	341	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	230	231	first strand
Strand 2	G	253	257	anti-parallel
Strand 3	G	299	303	anti-parallel
Strand 4	G	283	296	anti-parallel
Strand 5	G	267	276	anti-parallel
Strand 6	G	332	334	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8SKG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKG