Analysis of interatomic Contacts of Structural Units in PDB entry:
8SKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8SKN entry

There are 2 chains in PDB entry 8SKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ARG 731
B
 GLY -2TRP 736
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8SKN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 2Right-handed 310
Helix 2
AA2
A
3 15Right-handed alpha
Helix 3
AA3
A
16 24Right-handed alpha
Helix 4
AA4
A
33 36Right-handed 310
Helix 5
AA5
A
37 47Right-handed alpha
Helix 6
AA6
A
103 116Right-handed alpha
Helix 7
AA7
A
160 175Right-handed alpha
Helix 8
AA8
A
190 193Right-handed 310
Helix 9
AA9
A
194 202Right-handed alpha
Helix 10
AB1
A
216 220Right-handed 310
Helix 11
AB2
A
226 231Right-handed alpha
Helix 12
AB3
A
248 254Right-handed alpha
Helix 13
AB4
A
257 273Right-handed alpha
Helix 14
AB5
A
276 280Right-handed 310
Helix 15
AB6
A
281 321Right-handed alpha
Helix 16
AB7
A
710 729Right-handed alpha
Helix 17
AB8
B
0 2Right-handed 310
Helix 18
AB9
B
3 15Right-handed alpha
Helix 19
AC1
B
16 24Right-handed alpha
Helix 20
AC2
B
34 36Right-handed 310
Helix 21
AC3
B
37 47Right-handed alpha
Helix 22
AC4
B
103 115Right-handed alpha
Helix 23
AC5
B
160 175Right-handed alpha
Helix 24
AC6
B
190 193Right-handed 310
Helix 25
AC7
B
194 202Right-handed alpha
Helix 26
AC8
B
216 220Right-handed 310
Helix 27
AC9
B
226 231Right-handed alpha
Helix 28
AD1
B
248 254Right-handed alpha
Helix 29
AD2
B
257 273Right-handed alpha
Helix 30
AD3
B
276 280Right-handed 310
Helix 31
AD4
B
281 320Right-handed alpha
Helix 32
AD5
B
709 729Right-handed alpha
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There are 2 sheets in PDB entry 8SKN. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
63 69parallel
Strand 4
A
142 146anti-parallel
Strand 5
A
27 31parallel
Strand 6
A
179 186parallel
Strand 7
A
210 215parallel
Strand 8
A
241 243parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
130 136anti-parallel
Strand 3
B
63 69parallel
Strand 4
B
142 146anti-parallel
Strand 5
B
27 32parallel
Strand 6
B
179 186parallel
Strand 7
B
210 215parallel
Strand 8
B
241 243parallel
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